Hb_103494_010

Information

Type -
Description -
Location Contig103494: 13939-14991
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_103494_010 0.0 - - -
2 Hb_006816_170 0.1879089368 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump 1-like [Jatropha curcas]
3 Hb_000270_220 0.2002491462 - - hypothetical protein EUTSA_v100213350mg, partial [Eutrema salsugineum]
4 Hb_000384_040 0.2083911103 - - PREDICTED: uncharacterized protein LOC105640093 [Jatropha curcas]
5 Hb_001247_200 0.2224427781 - - PREDICTED: clathrin coat assembly protein AP180 [Jatropha curcas]
6 Hb_000384_030 0.2250001048 - - PREDICTED: uncharacterized protein LOC101310565 isoform X1 [Fragaria vesca subsp. vesca]
7 Hb_004348_010 0.231763017 - - hypothetical protein POPTR_0077s002302g, partial [Populus trichocarpa]
8 Hb_000933_100 0.2332525715 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004635_130 0.2506355189 - - PREDICTED: probable small nuclear ribonucleoprotein G [Populus euphratica]
10 Hb_004767_090 0.2537813326 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
11 Hb_004567_100 0.2555696734 - - PREDICTED: uncharacterized protein LOC105644934 [Jatropha curcas]
12 Hb_004342_030 0.2562977609 - - phosphofructokinase [Hevea brasiliensis]
13 Hb_002289_100 0.257134214 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 2 [Jatropha curcas]
14 Hb_004129_120 0.2584081835 - - -
15 Hb_002067_040 0.2591942164 - - dihydrodipicolinate reductase, putative [Ricinus communis]
16 Hb_001329_240 0.2592904352 - - hypothetical protein POPTR_0002s18920g [Populus trichocarpa]
17 Hb_058643_010 0.2611380929 - - hydrolase, putative [Ricinus communis]
18 Hb_009898_020 0.2619547351 - - hypothetical protein JCGZ_23951 [Jatropha curcas]
19 Hb_089032_020 0.2636113166 - - PREDICTED: BRCA1-associated protein [Jatropha curcas]
20 Hb_015026_110 0.2650789101 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]

Gene co-expression network

sample Hb_103494_010 Hb_103494_010 Hb_006816_170 Hb_006816_170 Hb_103494_010--Hb_006816_170 Hb_000270_220 Hb_000270_220 Hb_103494_010--Hb_000270_220 Hb_000384_040 Hb_000384_040 Hb_103494_010--Hb_000384_040 Hb_001247_200 Hb_001247_200 Hb_103494_010--Hb_001247_200 Hb_000384_030 Hb_000384_030 Hb_103494_010--Hb_000384_030 Hb_004348_010 Hb_004348_010 Hb_103494_010--Hb_004348_010 Hb_006816_170--Hb_001247_200 Hb_002489_010 Hb_002489_010 Hb_006816_170--Hb_002489_010 Hb_002239_040 Hb_002239_040 Hb_006816_170--Hb_002239_040 Hb_034299_040 Hb_034299_040 Hb_006816_170--Hb_034299_040 Hb_006816_170--Hb_000384_030 Hb_002233_090 Hb_002233_090 Hb_006816_170--Hb_002233_090 Hb_148079_010 Hb_148079_010 Hb_000270_220--Hb_148079_010 Hb_019053_020 Hb_019053_020 Hb_000270_220--Hb_019053_020 Hb_005147_060 Hb_005147_060 Hb_000270_220--Hb_005147_060 Hb_058643_010 Hb_058643_010 Hb_000270_220--Hb_058643_010 Hb_000021_030 Hb_000021_030 Hb_000270_220--Hb_000021_030 Hb_004732_020 Hb_004732_020 Hb_000270_220--Hb_004732_020 Hb_000384_040--Hb_002233_090 Hb_002400_100 Hb_002400_100 Hb_000384_040--Hb_002400_100 Hb_087340_010 Hb_087340_010 Hb_000384_040--Hb_087340_010 Hb_000025_310 Hb_000025_310 Hb_000384_040--Hb_000025_310 Hb_001678_020 Hb_001678_020 Hb_000384_040--Hb_001678_020 Hb_001247_200--Hb_000384_030 Hb_000926_120 Hb_000926_120 Hb_001247_200--Hb_000926_120 Hb_001152_030 Hb_001152_030 Hb_001247_200--Hb_001152_030 Hb_000984_050 Hb_000984_050 Hb_001247_200--Hb_000984_050 Hb_001247_200--Hb_058643_010 Hb_001278_070 Hb_001278_070 Hb_000384_030--Hb_001278_070 Hb_000384_030--Hb_058643_010 Hb_002217_150 Hb_002217_150 Hb_000384_030--Hb_002217_150 Hb_009898_020 Hb_009898_020 Hb_000384_030--Hb_009898_020 Hb_004348_010--Hb_002239_040 Hb_004348_010--Hb_006816_170 Hb_002311_250 Hb_002311_250 Hb_004348_010--Hb_002311_250 Hb_004129_120 Hb_004129_120 Hb_004348_010--Hb_004129_120 Hb_002374_440 Hb_002374_440 Hb_004348_010--Hb_002374_440 Hb_001902_070 Hb_001902_070 Hb_004348_010--Hb_001902_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.225874 0.196694 0.420019 0.63548 3.88111 1.72204
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.355718 0.977897 0.455231 2.19147 0.250345

CAGE analysis