Hb_001678_020

Information

Type -
Description -
Location Contig1678: 11604-13353
Sequence    

Annotation

kegg
ID cit:102610887
description uncharacterized LOC102610887
nr
ID XP_011075658.1
description PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
swissprot
ID -
description -
trembl
ID A5AJD0
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012031 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001678_020 0.0 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
2 Hb_000101_160 0.1325491166 - - PREDICTED: uncharacterized protein LOC105133607 isoform X1 [Populus euphratica]
3 Hb_010620_010 0.1903872035 - - hypothetical protein JCGZ_22570 [Jatropha curcas]
4 Hb_000103_360 0.1951164707 - - -
5 Hb_023323_010 0.2009420621 - - PREDICTED: uncharacterized protein LOC104901296 [Beta vulgaris subsp. vulgaris]
6 Hb_002233_090 0.2140797951 - - PREDICTED: bromodomain-containing protein 3 [Jatropha curcas]
7 Hb_000384_040 0.214701852 - - PREDICTED: uncharacterized protein LOC105640093 [Jatropha curcas]
8 Hb_001506_010 0.2241648774 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
9 Hb_000827_080 0.2327111527 - - catalytic, putative [Ricinus communis]
10 Hb_000250_080 0.234618456 - - hypothetical protein B456_003G1510001, partial [Gossypium raimondii]
11 Hb_047661_010 0.239832135 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
12 Hb_000176_170 0.2402680677 - - PREDICTED: tetratricopeptide repeat protein 1 [Jatropha curcas]
13 Hb_010317_020 0.2403471601 - - PREDICTED: sarcoplasmic reticulum histidine-rich calcium-binding protein [Jatropha curcas]
14 Hb_004460_020 0.2403595446 - - chaperone protein DNAj, putative [Ricinus communis]
15 Hb_000038_030 0.2430287603 - - PREDICTED: probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7-like [Glycine max]
16 Hb_004102_130 0.2434321097 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005989_010 0.2473585881 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
18 Hb_138600_010 0.2498340642 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 [Jatropha curcas]
19 Hb_029510_010 0.2513755168 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 [Jatropha curcas]
20 Hb_087340_010 0.2537429556 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001678_020 Hb_001678_020 Hb_000101_160 Hb_000101_160 Hb_001678_020--Hb_000101_160 Hb_010620_010 Hb_010620_010 Hb_001678_020--Hb_010620_010 Hb_000103_360 Hb_000103_360 Hb_001678_020--Hb_000103_360 Hb_023323_010 Hb_023323_010 Hb_001678_020--Hb_023323_010 Hb_002233_090 Hb_002233_090 Hb_001678_020--Hb_002233_090 Hb_000384_040 Hb_000384_040 Hb_001678_020--Hb_000384_040 Hb_001506_010 Hb_001506_010 Hb_000101_160--Hb_001506_010 Hb_000857_050 Hb_000857_050 Hb_000101_160--Hb_000857_050 Hb_007603_010 Hb_007603_010 Hb_000101_160--Hb_007603_010 Hb_138600_010 Hb_138600_010 Hb_000101_160--Hb_138600_010 Hb_000101_160--Hb_002233_090 Hb_000431_020 Hb_000431_020 Hb_010620_010--Hb_000431_020 Hb_001102_260 Hb_001102_260 Hb_010620_010--Hb_001102_260 Hb_010620_010--Hb_000101_160 Hb_008725_150 Hb_008725_150 Hb_010620_010--Hb_008725_150 Hb_006846_090 Hb_006846_090 Hb_010620_010--Hb_006846_090 Hb_006901_040 Hb_006901_040 Hb_000103_360--Hb_006901_040 Hb_000103_360--Hb_002233_090 Hb_000453_080 Hb_000453_080 Hb_000103_360--Hb_000453_080 Hb_000025_310 Hb_000025_310 Hb_000103_360--Hb_000025_310 Hb_005914_090 Hb_005914_090 Hb_000103_360--Hb_005914_090 Hb_005989_010 Hb_005989_010 Hb_023323_010--Hb_005989_010 Hb_009973_020 Hb_009973_020 Hb_023323_010--Hb_009973_020 Hb_047661_010 Hb_047661_010 Hb_023323_010--Hb_047661_010 Hb_000322_110 Hb_000322_110 Hb_023323_010--Hb_000322_110 Hb_005656_060 Hb_005656_060 Hb_023323_010--Hb_005656_060 Hb_109168_010 Hb_109168_010 Hb_002233_090--Hb_109168_010 Hb_001959_050 Hb_001959_050 Hb_002233_090--Hb_001959_050 Hb_000395_140 Hb_000395_140 Hb_002233_090--Hb_000395_140 Hb_001040_170 Hb_001040_170 Hb_002233_090--Hb_001040_170 Hb_006091_030 Hb_006091_030 Hb_002233_090--Hb_006091_030 Hb_000926_120 Hb_000926_120 Hb_002233_090--Hb_000926_120 Hb_000384_040--Hb_002233_090 Hb_002400_100 Hb_002400_100 Hb_000384_040--Hb_002400_100 Hb_087340_010 Hb_087340_010 Hb_000384_040--Hb_087340_010 Hb_000384_040--Hb_000025_310 Hb_103494_010 Hb_103494_010 Hb_000384_040--Hb_103494_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.464817 0.232527 0.046716 0.0669394 2.18956 1.82993
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.022263 0.755262 0.532595 0.140205

CAGE analysis