Hb_000025_310

Information

Type -
Description -
Location Contig25: 295911-297093
Sequence    

Annotation

kegg
ID rcu:RCOM_1478880
description hypothetical protein
nr
ID XP_002526060.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SJ91
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1478880 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26087: 295767-297110
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000025_310 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_188964_010 0.1194322719 - - maintenance of killer 16 (mak16) protein, putative [Ricinus communis]
3 Hb_001582_030 0.1204373648 - - PREDICTED: uncharacterized protein LOC105639462 [Jatropha curcas]
4 Hb_007441_070 0.1206234581 - - hypothetical protein PRUPE_ppa004494mg [Prunus persica]
5 Hb_000771_160 0.1241071801 - - PREDICTED: abscisic acid receptor PYL8 [Jatropha curcas]
6 Hb_003581_020 0.1271511992 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
7 Hb_019871_020 0.1277190594 - - PREDICTED: uncharacterized protein LOC105642047 [Jatropha curcas]
8 Hb_000940_040 0.127876755 - - PREDICTED: protein XAP5 CIRCADIAN TIMEKEEPER isoform X1 [Jatropha curcas]
9 Hb_004567_100 0.1344391694 - - PREDICTED: uncharacterized protein LOC105644934 [Jatropha curcas]
10 Hb_001357_190 0.1346278816 - - ribonuclease III, putative [Ricinus communis]
11 Hb_007111_040 0.1357061059 - - PREDICTED: uncharacterized protein LOC105628142 isoform X1 [Jatropha curcas]
12 Hb_005000_270 0.1390538746 - - unnamed protein product [Vitis vinifera]
13 Hb_004669_040 0.1392334396 - - ATPase inhibitor, putative [Ricinus communis]
14 Hb_005228_080 0.1399878028 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 3-I [Jatropha curcas]
15 Hb_000256_270 0.140097434 - - PREDICTED: large proline-rich protein bag6-B isoform X1 [Jatropha curcas]
16 Hb_000395_140 0.1415452147 - - Oligopeptide transporter, putative [Ricinus communis]
17 Hb_000827_080 0.1423621022 - - catalytic, putative [Ricinus communis]
18 Hb_000613_100 0.1425411592 - - PREDICTED: long chain acyl-CoA synthetase 8 [Jatropha curcas]
19 Hb_002811_120 0.1435555115 - - PREDICTED: DNA-damage-repair/toleration protein DRT102 [Jatropha curcas]
20 Hb_007668_020 0.1453883357 - - PREDICTED: uncharacterized protein LOC105631102 [Jatropha curcas]

Gene co-expression network

sample Hb_000025_310 Hb_000025_310 Hb_188964_010 Hb_188964_010 Hb_000025_310--Hb_188964_010 Hb_001582_030 Hb_001582_030 Hb_000025_310--Hb_001582_030 Hb_007441_070 Hb_007441_070 Hb_000025_310--Hb_007441_070 Hb_000771_160 Hb_000771_160 Hb_000025_310--Hb_000771_160 Hb_003581_020 Hb_003581_020 Hb_000025_310--Hb_003581_020 Hb_019871_020 Hb_019871_020 Hb_000025_310--Hb_019871_020 Hb_005228_080 Hb_005228_080 Hb_188964_010--Hb_005228_080 Hb_188964_010--Hb_003581_020 Hb_000906_060 Hb_000906_060 Hb_188964_010--Hb_000906_060 Hb_004567_100 Hb_004567_100 Hb_188964_010--Hb_004567_100 Hb_188964_010--Hb_001582_030 Hb_000613_100 Hb_000613_100 Hb_188964_010--Hb_000613_100 Hb_005000_270 Hb_005000_270 Hb_001582_030--Hb_005000_270 Hb_000212_280 Hb_000212_280 Hb_001582_030--Hb_000212_280 Hb_000134_360 Hb_000134_360 Hb_001582_030--Hb_000134_360 Hb_001582_030--Hb_019871_020 Hb_008528_010 Hb_008528_010 Hb_001582_030--Hb_008528_010 Hb_000732_020 Hb_000732_020 Hb_001582_030--Hb_000732_020 Hb_000940_040 Hb_000940_040 Hb_007441_070--Hb_000940_040 Hb_011644_020 Hb_011644_020 Hb_007441_070--Hb_011644_020 Hb_007441_070--Hb_019871_020 Hb_007441_070--Hb_001582_030 Hb_001357_190 Hb_001357_190 Hb_007441_070--Hb_001357_190 Hb_000152_890 Hb_000152_890 Hb_007441_070--Hb_000152_890 Hb_002405_020 Hb_002405_020 Hb_000771_160--Hb_002405_020 Hb_113216_010 Hb_113216_010 Hb_000771_160--Hb_113216_010 Hb_004669_040 Hb_004669_040 Hb_000771_160--Hb_004669_040 Hb_000185_090 Hb_000185_090 Hb_000771_160--Hb_000185_090 Hb_000771_160--Hb_001582_030 Hb_009615_110 Hb_009615_110 Hb_000771_160--Hb_009615_110 Hb_007668_020 Hb_007668_020 Hb_003581_020--Hb_007668_020 Hb_003716_020 Hb_003716_020 Hb_003581_020--Hb_003716_020 Hb_083043_010 Hb_083043_010 Hb_003581_020--Hb_083043_010 Hb_007668_040 Hb_007668_040 Hb_003581_020--Hb_007668_040 Hb_004881_050 Hb_004881_050 Hb_003581_020--Hb_004881_050 Hb_000372_040 Hb_000372_040 Hb_003581_020--Hb_000372_040 Hb_000608_340 Hb_000608_340 Hb_019871_020--Hb_000608_340 Hb_006173_020 Hb_006173_020 Hb_019871_020--Hb_006173_020 Hb_004531_090 Hb_004531_090 Hb_019871_020--Hb_004531_090 Hb_019871_020--Hb_000185_090 Hb_019871_020--Hb_000940_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.8868 12.0369 6.70264 10.0533 87.7095 90.5064
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.7388 18.1656 14.6281 24.3065 3.26794

CAGE analysis