Hb_005228_080

Information

Type -
Description -
Location Contig5228: 64952-90833
Sequence    

Annotation

kegg
ID tcc:TCM_006944
description Cleavage and polyadenylation specificity factor 73-I
nr
ID XP_012071283.1
description PREDICTED: cleavage and polyadenylation specificity factor subunit 3-I [Jatropha curcas]
swissprot
ID Q9C952
description Cleavage and polyadenylation specificity factor subunit 3-I OS=Arabidopsis thaliana GN=CPSF73-I PE=1 SV=1
trembl
ID A0A067KRH9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04968 PE=4 SV=1
Gene Ontology
ID GO:0005634
description cleavage and polyadenylation specificity factor subunit 3-i-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46881: 81454-81936 , PASA_asmbl_46882: 82043-82442 , PASA_asmbl_46883: 82831-88295 , PASA_asmbl_46884: 86672-86992
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005228_080 0.0 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 3-I [Jatropha curcas]
2 Hb_188964_010 0.0918730997 - - maintenance of killer 16 (mak16) protein, putative [Ricinus communis]
3 Hb_004567_100 0.1091860593 - - PREDICTED: uncharacterized protein LOC105644934 [Jatropha curcas]
4 Hb_002687_190 0.1131296237 - - prolyl oligopeptidase [Cicer arietinum]
5 Hb_002235_320 0.1146120433 - - PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform X1 [Jatropha curcas]
6 Hb_000003_790 0.1196367663 - - PREDICTED: nuclear poly(A) polymerase 4-like [Jatropha curcas]
7 Hb_003581_020 0.1221182379 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
8 Hb_000261_520 0.1243479087 - - PREDICTED: uncharacterized protein LOC105633192 [Jatropha curcas]
9 Hb_000108_080 0.1282041883 - - PREDICTED: importin-5 [Jatropha curcas]
10 Hb_000940_040 0.1282976796 - - PREDICTED: protein XAP5 CIRCADIAN TIMEKEEPER isoform X1 [Jatropha curcas]
11 Hb_006002_030 0.1286250542 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
12 Hb_000329_490 0.1292761805 - - hypothetical protein JCGZ_14582 [Jatropha curcas]
13 Hb_017711_020 0.1299495459 - - PREDICTED: cysteine-rich repeat secretory protein 56 isoform X1 [Jatropha curcas]
14 Hb_007416_310 0.1310605284 - - PREDICTED: zinc finger protein 622 [Jatropha curcas]
15 Hb_005895_040 0.1314546336 - - PREDICTED: tRNA threonylcarbamoyladenosine dehydratase [Jatropha curcas]
16 Hb_007380_080 0.1315002656 transcription factor TF Family: G2-like PREDICTED: myb family transcription factor APL-like [Jatropha curcas]
17 Hb_091384_010 0.1320416038 - - hypothetical protein JCGZ_09207 [Jatropha curcas]
18 Hb_000613_100 0.1328981547 - - PREDICTED: long chain acyl-CoA synthetase 8 [Jatropha curcas]
19 Hb_004225_130 0.1329798078 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105628060 isoform X1 [Jatropha curcas]
20 Hb_079738_010 0.1336944092 - - hypothetical protein CISIN_1g036582mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_005228_080 Hb_005228_080 Hb_188964_010 Hb_188964_010 Hb_005228_080--Hb_188964_010 Hb_004567_100 Hb_004567_100 Hb_005228_080--Hb_004567_100 Hb_002687_190 Hb_002687_190 Hb_005228_080--Hb_002687_190 Hb_002235_320 Hb_002235_320 Hb_005228_080--Hb_002235_320 Hb_000003_790 Hb_000003_790 Hb_005228_080--Hb_000003_790 Hb_003581_020 Hb_003581_020 Hb_005228_080--Hb_003581_020 Hb_188964_010--Hb_003581_020 Hb_000906_060 Hb_000906_060 Hb_188964_010--Hb_000906_060 Hb_188964_010--Hb_004567_100 Hb_001582_030 Hb_001582_030 Hb_188964_010--Hb_001582_030 Hb_000613_100 Hb_000613_100 Hb_188964_010--Hb_000613_100 Hb_005214_160 Hb_005214_160 Hb_004567_100--Hb_005214_160 Hb_002701_080 Hb_002701_080 Hb_004567_100--Hb_002701_080 Hb_012654_010 Hb_012654_010 Hb_004567_100--Hb_012654_010 Hb_000059_150 Hb_000059_150 Hb_004567_100--Hb_000059_150 Hb_003506_080 Hb_003506_080 Hb_004567_100--Hb_003506_080 Hb_000270_140 Hb_000270_140 Hb_004567_100--Hb_000270_140 Hb_006114_020 Hb_006114_020 Hb_002687_190--Hb_006114_020 Hb_000329_490 Hb_000329_490 Hb_002687_190--Hb_000329_490 Hb_007668_020 Hb_007668_020 Hb_002687_190--Hb_007668_020 Hb_002307_350 Hb_002307_350 Hb_002687_190--Hb_002307_350 Hb_006882_010 Hb_006882_010 Hb_002687_190--Hb_006882_010 Hb_004225_130 Hb_004225_130 Hb_002235_320--Hb_004225_130 Hb_002883_010 Hb_002883_010 Hb_002235_320--Hb_002883_010 Hb_000239_070 Hb_000239_070 Hb_002235_320--Hb_000239_070 Hb_006002_030 Hb_006002_030 Hb_002235_320--Hb_006002_030 Hb_007416_310 Hb_007416_310 Hb_002235_320--Hb_007416_310 Hb_001019_170 Hb_001019_170 Hb_002235_320--Hb_001019_170 Hb_000134_360 Hb_000134_360 Hb_000003_790--Hb_000134_360 Hb_000317_440 Hb_000317_440 Hb_000003_790--Hb_000317_440 Hb_001975_020 Hb_001975_020 Hb_000003_790--Hb_001975_020 Hb_008528_010 Hb_008528_010 Hb_000003_790--Hb_008528_010 Hb_000003_790--Hb_002235_320 Hb_002725_070 Hb_002725_070 Hb_000003_790--Hb_002725_070 Hb_003581_020--Hb_007668_020 Hb_003716_020 Hb_003716_020 Hb_003581_020--Hb_003716_020 Hb_083043_010 Hb_083043_010 Hb_003581_020--Hb_083043_010 Hb_007668_040 Hb_007668_040 Hb_003581_020--Hb_007668_040 Hb_004881_050 Hb_004881_050 Hb_003581_020--Hb_004881_050 Hb_000372_040 Hb_000372_040 Hb_003581_020--Hb_000372_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.0087 10.0767 8.05828 4.93009 39.7587 37.2903
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.5693 4.6509 7.43669 10.4996 4.58726

CAGE analysis