Hb_003073_130

Information

Type transcription factor
Description TF Family: B3
Location Contig3073: 109117-110794
Sequence    

Annotation

kegg
ID tcc:TCM_000516
description AP2/B3-like transcriptional factor family protein, putative
nr
ID XP_012091521.1
description PREDICTED: B3 domain-containing transcription factor VRN1-like [Jatropha curcas]
swissprot
ID Q2QMT6
description B3 domain-containing protein LOC_Os12g40080 OS=Oryza sativa subsp. japonica GN=Os12g0591400 PE=3 SV=1
trembl
ID A0A067LJW4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01470 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003073_130 0.0 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1-like [Jatropha curcas]
2 Hb_000061_410 0.1431508878 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
3 Hb_000155_070 0.1598518782 transcription factor TF Family: NAC NAC transcription factor [Hevea brasiliensis]
4 Hb_014067_010 0.1650549699 - - hypothetical protein JCGZ_09524 [Jatropha curcas]
5 Hb_000907_100 0.1685418212 transcription factor TF Family: zf-HD hypothetical protein POPTR_0012s03770g, partial [Populus trichocarpa]
6 Hb_003627_020 0.1760815986 - - PREDICTED: probable calcium-binding protein CML49 [Jatropha curcas]
7 Hb_004884_060 0.1808963138 transcription factor TF Family: G2-like PREDICTED: putative Myb family transcription factor At1g14600 [Jatropha curcas]
8 Hb_003507_020 0.1809332794 - - PREDICTED: uncharacterized protein LOC105641595 [Jatropha curcas]
9 Hb_001252_160 0.1812189134 - - PREDICTED: PRA1 family protein A3 [Jatropha curcas]
10 Hb_041774_010 0.1816043601 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
11 Hb_002843_160 0.1817133202 - - PREDICTED: leucine-rich repeat receptor-like protein kinase PEPR1 [Jatropha curcas]
12 Hb_002038_060 0.1858596662 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC100265010 [Vitis vinifera]
13 Hb_154381_050 0.1861849419 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004126_010 0.1892214786 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
15 Hb_000457_160 0.194161343 - - PREDICTED: uncharacterized protein LOC105633076 [Jatropha curcas]
16 Hb_000853_370 0.1955581915 - - PREDICTED: uncharacterized protein LOC105642590 [Jatropha curcas]
17 Hb_000914_060 0.1972048222 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor PLT1 [Populus euphratica]
18 Hb_000086_220 0.1972248763 - - -
19 Hb_003656_030 0.1987628092 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
20 Hb_103873_010 0.198879405 - - hypothetical protein POPTR_0008s14260g [Populus trichocarpa]

Gene co-expression network

sample Hb_003073_130 Hb_003073_130 Hb_000061_410 Hb_000061_410 Hb_003073_130--Hb_000061_410 Hb_000155_070 Hb_000155_070 Hb_003073_130--Hb_000155_070 Hb_014067_010 Hb_014067_010 Hb_003073_130--Hb_014067_010 Hb_000907_100 Hb_000907_100 Hb_003073_130--Hb_000907_100 Hb_003627_020 Hb_003627_020 Hb_003073_130--Hb_003627_020 Hb_004884_060 Hb_004884_060 Hb_003073_130--Hb_004884_060 Hb_001252_160 Hb_001252_160 Hb_000061_410--Hb_001252_160 Hb_000061_410--Hb_000155_070 Hb_000061_410--Hb_003627_020 Hb_003507_020 Hb_003507_020 Hb_000061_410--Hb_003507_020 Hb_064201_010 Hb_064201_010 Hb_000061_410--Hb_064201_010 Hb_029464_010 Hb_029464_010 Hb_000061_410--Hb_029464_010 Hb_000914_060 Hb_000914_060 Hb_000155_070--Hb_000914_060 Hb_002301_020 Hb_002301_020 Hb_000155_070--Hb_002301_020 Hb_003327_060 Hb_003327_060 Hb_000155_070--Hb_003327_060 Hb_000155_070--Hb_003627_020 Hb_000155_070--Hb_000907_100 Hb_004126_010 Hb_004126_010 Hb_000155_070--Hb_004126_010 Hb_014067_010--Hb_004126_010 Hb_000249_110 Hb_000249_110 Hb_014067_010--Hb_000249_110 Hb_138413_010 Hb_138413_010 Hb_014067_010--Hb_138413_010 Hb_002843_160 Hb_002843_160 Hb_014067_010--Hb_002843_160 Hb_005730_020 Hb_005730_020 Hb_014067_010--Hb_005730_020 Hb_009510_030 Hb_009510_030 Hb_014067_010--Hb_009510_030 Hb_000907_100--Hb_004884_060 Hb_000571_070 Hb_000571_070 Hb_000907_100--Hb_000571_070 Hb_000907_100--Hb_002301_020 Hb_000907_100--Hb_004126_010 Hb_003906_110 Hb_003906_110 Hb_000907_100--Hb_003906_110 Hb_003627_020--Hb_004126_010 Hb_003627_020--Hb_003507_020 Hb_003656_030 Hb_003656_030 Hb_003627_020--Hb_003656_030 Hb_007178_010 Hb_007178_010 Hb_003627_020--Hb_007178_010 Hb_005488_070 Hb_005488_070 Hb_003627_020--Hb_005488_070 Hb_003627_020--Hb_009510_030 Hb_004884_060--Hb_003906_110 Hb_004884_060--Hb_000249_110 Hb_002989_080 Hb_002989_080 Hb_004884_060--Hb_002989_080 Hb_004884_060--Hb_007178_010 Hb_004884_060--Hb_002843_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.72554 0.0807247 0 0.0242728 2.77984 4.19059
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.516956 1.10381 1.84434 0.0697199 0

CAGE analysis