Hb_058884_010

Information

Type -
Description -
Location Contig58884: 47-674
Sequence    

Annotation

kegg
ID rcu:RCOM_0484440
description Wound-induced protein WIN1 precursor, putative
nr
ID XP_012089267.1
description PREDICTED: barwin-like [Jatropha curcas]
swissprot
ID P09761
description Wound-induced protein WIN1 OS=Solanum tuberosum GN=WIN1 PE=2 SV=1
trembl
ID A0A067JLH1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23501 PE=4 SV=1
Gene Ontology
ID GO:0008061
description wound-induced protein win1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50062: 32-755
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_058884_010 0.0 - - PREDICTED: barwin-like [Jatropha curcas]
2 Hb_041774_010 0.2171920564 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
3 Hb_003073_130 0.2450460341 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1-like [Jatropha curcas]
4 Hb_087340_010 0.2468815512 - - conserved hypothetical protein [Ricinus communis]
5 Hb_053543_010 0.2487694616 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001668_030 0.2574966434 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000384_040 0.2575579274 - - PREDICTED: uncharacterized protein LOC105640093 [Jatropha curcas]
8 Hb_006846_090 0.2577575557 - - PREDICTED: uncharacterized protein LOC105648695 [Jatropha curcas]
9 Hb_001115_050 0.2587891909 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
10 Hb_004460_020 0.2592814746 - - chaperone protein DNAj, putative [Ricinus communis]
11 Hb_000210_130 0.261406589 - - PREDICTED: chaperone protein ClpB4, mitochondrial [Vitis vinifera]
12 Hb_154381_050 0.2656310505 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000061_410 0.2709355272 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
14 Hb_034083_010 0.2723705843 - - conserved hypothetical protein [Ricinus communis]
15 Hb_037960_020 0.2742276685 - - hypothetical protein CICLE_v10026841mg [Citrus clementina]
16 Hb_043959_010 0.2754974795 - - PREDICTED: transcriptional activator DEMETER isoform X2 [Jatropha curcas]
17 Hb_000317_080 0.2759047197 - - PREDICTED: probable galacturonosyltransferase 10 [Jatropha curcas]
18 Hb_001767_020 0.2763661434 - - PREDICTED: WAT1-related protein At1g68170-like, partial [Jatropha curcas]
19 Hb_043629_020 0.2777169021 - - hypothetical protein POPTR_0009s13360g [Populus trichocarpa]
20 Hb_001116_020 0.278978262 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPS2-like [Eucalyptus grandis]

Gene co-expression network

sample Hb_058884_010 Hb_058884_010 Hb_041774_010 Hb_041774_010 Hb_058884_010--Hb_041774_010 Hb_003073_130 Hb_003073_130 Hb_058884_010--Hb_003073_130 Hb_087340_010 Hb_087340_010 Hb_058884_010--Hb_087340_010 Hb_053543_010 Hb_053543_010 Hb_058884_010--Hb_053543_010 Hb_001668_030 Hb_001668_030 Hb_058884_010--Hb_001668_030 Hb_000384_040 Hb_000384_040 Hb_058884_010--Hb_000384_040 Hb_001767_020 Hb_001767_020 Hb_041774_010--Hb_001767_020 Hb_041774_010--Hb_003073_130 Hb_098466_010 Hb_098466_010 Hb_041774_010--Hb_098466_010 Hb_041774_010--Hb_001668_030 Hb_005867_080 Hb_005867_080 Hb_041774_010--Hb_005867_080 Hb_000061_410 Hb_000061_410 Hb_003073_130--Hb_000061_410 Hb_000155_070 Hb_000155_070 Hb_003073_130--Hb_000155_070 Hb_014067_010 Hb_014067_010 Hb_003073_130--Hb_014067_010 Hb_000907_100 Hb_000907_100 Hb_003073_130--Hb_000907_100 Hb_003627_020 Hb_003627_020 Hb_003073_130--Hb_003627_020 Hb_004884_060 Hb_004884_060 Hb_003073_130--Hb_004884_060 Hb_087340_010--Hb_000384_040 Hb_001678_020 Hb_001678_020 Hb_087340_010--Hb_001678_020 Hb_007101_200 Hb_007101_200 Hb_087340_010--Hb_007101_200 Hb_023323_010 Hb_023323_010 Hb_087340_010--Hb_023323_010 Hb_002233_090 Hb_002233_090 Hb_087340_010--Hb_002233_090 Hb_000987_050 Hb_000987_050 Hb_053543_010--Hb_000987_050 Hb_043959_010 Hb_043959_010 Hb_053543_010--Hb_043959_010 Hb_000317_080 Hb_000317_080 Hb_053543_010--Hb_000317_080 Hb_001268_230 Hb_001268_230 Hb_053543_010--Hb_001268_230 Hb_098315_110 Hb_098315_110 Hb_053543_010--Hb_098315_110 Hb_130177_010 Hb_130177_010 Hb_053543_010--Hb_130177_010 Hb_002253_110 Hb_002253_110 Hb_001668_030--Hb_002253_110 Hb_001513_020 Hb_001513_020 Hb_001668_030--Hb_001513_020 Hb_004480_070 Hb_004480_070 Hb_001668_030--Hb_004480_070 Hb_001675_060 Hb_001675_060 Hb_001668_030--Hb_001675_060 Hb_001668_030--Hb_001767_020 Hb_004460_020 Hb_004460_020 Hb_001668_030--Hb_004460_020 Hb_000384_040--Hb_002233_090 Hb_002400_100 Hb_002400_100 Hb_000384_040--Hb_002400_100 Hb_000025_310 Hb_000025_310 Hb_000384_040--Hb_000025_310 Hb_103494_010 Hb_103494_010 Hb_000384_040--Hb_103494_010 Hb_000384_040--Hb_001678_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.03084 0.056051 0.302534 0 21.5904 17.4816
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.506868 5.77434 5.26541 0.825147 1.12527

CAGE analysis