Hb_043959_010

Information

Type -
Description -
Location Contig43959: 10399-18248
Sequence    

Annotation

kegg
ID rcu:RCOM_0436260
description hypothetical protein
nr
ID XP_012089976.1
description PREDICTED: transcriptional activator DEMETER isoform X2 [Jatropha curcas]
swissprot
ID Q8LK56
description Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME PE=1 SV=2
trembl
ID A0A067LCQ2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01528 PE=4 SV=1
Gene Ontology
ID GO:0003824
description transcriptional activator demeter-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42598: 17957-18358
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_043959_010 0.0 - - PREDICTED: transcriptional activator DEMETER isoform X2 [Jatropha curcas]
2 Hb_002172_030 0.0939015324 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105639104 isoform X1 [Jatropha curcas]
3 Hb_053543_010 0.103743221 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000210_130 0.1275998316 - - PREDICTED: chaperone protein ClpB4, mitochondrial [Vitis vinifera]
5 Hb_000300_540 0.1282596597 - - PREDICTED: syntaxin-132 [Jatropha curcas]
6 Hb_012654_020 0.1296595263 - - conserved hypothetical protein [Ricinus communis]
7 Hb_154381_050 0.1317306503 - - conserved hypothetical protein [Ricinus communis]
8 Hb_006029_010 0.1322122312 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]
9 Hb_011021_030 0.132760267 - - PREDICTED: uncharacterized protein LOC105644390 [Jatropha curcas]
10 Hb_098315_110 0.1337476706 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000987_050 0.1355695342 transcription factor TF Family: ERF conserved hypothetical protein [Ricinus communis]
12 Hb_007111_040 0.1377970798 - - PREDICTED: uncharacterized protein LOC105628142 isoform X1 [Jatropha curcas]
13 Hb_001115_050 0.1387222858 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
14 Hb_130177_010 0.1412168422 - - hypothetical protein RCOM_0897890 [Ricinus communis]
15 Hb_001628_110 0.1415404842 - - PREDICTED: synaptotagmin-2 [Jatropha curcas]
16 Hb_010368_070 0.142484362 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000050_120 0.1437012104 - - PREDICTED: uncharacterized protein LOC105630790 [Jatropha curcas]
18 Hb_000300_530 0.144652623 - - PREDICTED: uncharacterized protein DDB_G0286299-like [Gossypium raimondii]
19 Hb_004156_060 0.1457954179 - - neutral/alkaline invertase 1 [Hevea brasiliensis]
20 Hb_001268_230 0.1460096771 - - receptor serine-threonine protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_043959_010 Hb_043959_010 Hb_002172_030 Hb_002172_030 Hb_043959_010--Hb_002172_030 Hb_053543_010 Hb_053543_010 Hb_043959_010--Hb_053543_010 Hb_000210_130 Hb_000210_130 Hb_043959_010--Hb_000210_130 Hb_000300_540 Hb_000300_540 Hb_043959_010--Hb_000300_540 Hb_012654_020 Hb_012654_020 Hb_043959_010--Hb_012654_020 Hb_154381_050 Hb_154381_050 Hb_043959_010--Hb_154381_050 Hb_002172_030--Hb_012654_020 Hb_001846_080 Hb_001846_080 Hb_002172_030--Hb_001846_080 Hb_005410_010 Hb_005410_010 Hb_002172_030--Hb_005410_010 Hb_000050_120 Hb_000050_120 Hb_002172_030--Hb_000050_120 Hb_011609_190 Hb_011609_190 Hb_002172_030--Hb_011609_190 Hb_002172_030--Hb_154381_050 Hb_000987_050 Hb_000987_050 Hb_053543_010--Hb_000987_050 Hb_000317_080 Hb_000317_080 Hb_053543_010--Hb_000317_080 Hb_001268_230 Hb_001268_230 Hb_053543_010--Hb_001268_230 Hb_098315_110 Hb_098315_110 Hb_053543_010--Hb_098315_110 Hb_130177_010 Hb_130177_010 Hb_053543_010--Hb_130177_010 Hb_007111_040 Hb_007111_040 Hb_000210_130--Hb_007111_040 Hb_001628_110 Hb_001628_110 Hb_000210_130--Hb_001628_110 Hb_000210_130--Hb_005410_010 Hb_000210_130--Hb_154381_050 Hb_000210_130--Hb_002172_030 Hb_001623_580 Hb_001623_580 Hb_000210_130--Hb_001623_580 Hb_007786_010 Hb_007786_010 Hb_000300_540--Hb_007786_010 Hb_004032_460 Hb_004032_460 Hb_000300_540--Hb_004032_460 Hb_000062_230 Hb_000062_230 Hb_000300_540--Hb_000062_230 Hb_000300_540--Hb_002172_030 Hb_000363_340 Hb_000363_340 Hb_000300_540--Hb_000363_340 Hb_000173_370 Hb_000173_370 Hb_000300_540--Hb_000173_370 Hb_012654_020--Hb_005410_010 Hb_012654_020--Hb_011609_190 Hb_002078_040 Hb_002078_040 Hb_012654_020--Hb_002078_040 Hb_001776_080 Hb_001776_080 Hb_012654_020--Hb_001776_080 Hb_012654_020--Hb_000050_120 Hb_004156_060 Hb_004156_060 Hb_154381_050--Hb_004156_060 Hb_001115_050 Hb_001115_050 Hb_154381_050--Hb_001115_050 Hb_154381_050--Hb_005410_010 Hb_006029_010 Hb_006029_010 Hb_154381_050--Hb_006029_010 Hb_154381_050--Hb_012654_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.2416 0.473072 2.09456 0.370743 18.2193 12.4088
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.97292 3.45615 5.79834 0.84608 1.02765

CAGE analysis