Hb_001668_030

Information

Type -
Description -
Location Contig1668: 140510-140821
Sequence    

Annotation

kegg
ID rcu:RCOM_1447680
description hypothetical protein
nr
ID XP_002512931.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SD58
description Putative F-box protein At3g47150 OS=Arabidopsis thaliana GN=At3g47150 PE=4 SV=2
trembl
ID B9RH72
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1447680 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15383: 140560-140844
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001668_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002253_110 0.1657058778 - - cysteine desulfurylase, putative [Ricinus communis]
3 Hb_001513_020 0.1734806785 - - PREDICTED: methionine aminopeptidase 1A isoform X1 [Jatropha curcas]
4 Hb_004480_070 0.18342981 - - cytochrome P450, putative [Ricinus communis]
5 Hb_001675_060 0.1844039004 - - PREDICTED: dynein light chain 1, cytoplasmic-like [Jatropha curcas]
6 Hb_001767_020 0.1878427641 - - PREDICTED: WAT1-related protein At1g68170-like, partial [Jatropha curcas]
7 Hb_004460_020 0.1961038471 - - chaperone protein DNAj, putative [Ricinus communis]
8 Hb_041774_010 0.2062485907 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
9 Hb_064201_010 0.2171919954 - - hypothetical protein RCOM_1685970 [Ricinus communis]
10 Hb_001775_040 0.2174346241 - - -
11 Hb_000352_130 0.2174524454 - - hypothetical protein CISIN_1g0419111mg, partial [Citrus sinensis]
12 Hb_005016_150 0.2193299589 - - -
13 Hb_103351_010 0.2198881643 - - hypothetical protein POPTR_0002s01570g [Populus trichocarpa]
14 Hb_003226_170 0.2226187807 - - PREDICTED: poly [ADP-ribose] polymerase 2 isoform X1 [Jatropha curcas]
15 Hb_000213_060 0.2232394022 - - PREDICTED: RRP12-like protein isoform X1 [Jatropha curcas]
16 Hb_002769_040 0.2234135739 - - farnesyl-diphosphate farnesyltransferase, putative [Ricinus communis]
17 Hb_000454_030 0.2245943956 - - -
18 Hb_001146_070 0.2254898752 transcription factor TF Family: bHLH LMYC2 [Hevea brasiliensis]
19 Hb_003073_130 0.2256112615 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1-like [Jatropha curcas]
20 Hb_000580_060 0.2268997438 - - PREDICTED: uncharacterized protein LOC105643127 [Jatropha curcas]

Gene co-expression network

sample Hb_001668_030 Hb_001668_030 Hb_002253_110 Hb_002253_110 Hb_001668_030--Hb_002253_110 Hb_001513_020 Hb_001513_020 Hb_001668_030--Hb_001513_020 Hb_004480_070 Hb_004480_070 Hb_001668_030--Hb_004480_070 Hb_001675_060 Hb_001675_060 Hb_001668_030--Hb_001675_060 Hb_001767_020 Hb_001767_020 Hb_001668_030--Hb_001767_020 Hb_004460_020 Hb_004460_020 Hb_001668_030--Hb_004460_020 Hb_003360_020 Hb_003360_020 Hb_002253_110--Hb_003360_020 Hb_002769_040 Hb_002769_040 Hb_002253_110--Hb_002769_040 Hb_000856_100 Hb_000856_100 Hb_002253_110--Hb_000856_100 Hb_000033_060 Hb_000033_060 Hb_002253_110--Hb_000033_060 Hb_009193_130 Hb_009193_130 Hb_002253_110--Hb_009193_130 Hb_000117_020 Hb_000117_020 Hb_002253_110--Hb_000117_020 Hb_001477_010 Hb_001477_010 Hb_001513_020--Hb_001477_010 Hb_001513_020--Hb_001675_060 Hb_005016_150 Hb_005016_150 Hb_001513_020--Hb_005016_150 Hb_001712_050 Hb_001712_050 Hb_001513_020--Hb_001712_050 Hb_000256_270 Hb_000256_270 Hb_001513_020--Hb_000256_270 Hb_004480_070--Hb_001767_020 Hb_000352_130 Hb_000352_130 Hb_004480_070--Hb_000352_130 Hb_000580_060 Hb_000580_060 Hb_004480_070--Hb_000580_060 Hb_000211_080 Hb_000211_080 Hb_004480_070--Hb_000211_080 Hb_001775_040 Hb_001775_040 Hb_004480_070--Hb_001775_040 Hb_001675_060--Hb_005016_150 Hb_003226_170 Hb_003226_170 Hb_001675_060--Hb_003226_170 Hb_000213_060 Hb_000213_060 Hb_001675_060--Hb_000213_060 Hb_001675_060--Hb_001477_010 Hb_001675_060--Hb_000256_270 Hb_001767_020--Hb_004460_020 Hb_041774_010 Hb_041774_010 Hb_001767_020--Hb_041774_010 Hb_005867_080 Hb_005867_080 Hb_001767_020--Hb_005867_080 Hb_001767_020--Hb_001775_040 Hb_008147_030 Hb_008147_030 Hb_001767_020--Hb_008147_030 Hb_004102_130 Hb_004102_130 Hb_004460_020--Hb_004102_130 Hb_000038_150 Hb_000038_150 Hb_004460_020--Hb_000038_150 Hb_001159_210 Hb_001159_210 Hb_004460_020--Hb_001159_210 Hb_004460_020--Hb_008147_030 Hb_001268_230 Hb_001268_230 Hb_004460_020--Hb_001268_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.7673 1.40418 0.257998 0.469545 73.7897 134.314
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.83354 8.022 11.2492 3.08017 0.844142

CAGE analysis