Hb_000352_130

Information

Type -
Description -
Location Contig352: 132887-133570
Sequence    

Annotation

kegg
ID egr:104430896
description centriolin-like
nr
ID KDO46353.1
description hypothetical protein CISIN_1g0419111mg, partial [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067DU47
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0419111mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000352_130 0.0 - - hypothetical protein CISIN_1g0419111mg, partial [Citrus sinensis]
2 Hb_064201_010 0.1348390577 - - hypothetical protein RCOM_1685970 [Ricinus communis]
3 Hb_004206_040 0.137820318 - - cytochrome P450, putative [Ricinus communis]
4 Hb_001146_070 0.1451896402 transcription factor TF Family: bHLH LMYC2 [Hevea brasiliensis]
5 Hb_000185_090 0.1464779107 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
6 Hb_005271_030 0.1479984993 - - copper-transporting atpase p-type, putative [Ricinus communis]
7 Hb_000213_060 0.1511999538 - - PREDICTED: RRP12-like protein isoform X1 [Jatropha curcas]
8 Hb_000466_060 0.1559426768 - - phosphofructokinase [Hevea brasiliensis]
9 Hb_000454_030 0.1599904607 - - -
10 Hb_001846_080 0.1642026271 - - PREDICTED: poly(rC)-binding protein 3-like [Nicotiana sylvestris]
11 Hb_000580_060 0.1644294075 - - PREDICTED: uncharacterized protein LOC105643127 [Jatropha curcas]
12 Hb_000016_180 0.1656022228 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
13 Hb_003226_170 0.1690070801 - - PREDICTED: poly [ADP-ribose] polymerase 2 isoform X1 [Jatropha curcas]
14 Hb_001523_010 0.1692626658 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_25496 [Jatropha curcas]
15 Hb_035360_010 0.1704624569 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
16 Hb_000211_080 0.1720500497 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
17 Hb_006901_040 0.1739409058 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000792_110 0.1740058997 - - PREDICTED: E3 ubiquitin-protein ligase Hakai [Jatropha curcas]
19 Hb_001635_220 0.1741159122 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH87 [Jatropha curcas]
20 Hb_113216_010 0.1743848256 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]

Gene co-expression network

sample Hb_000352_130 Hb_000352_130 Hb_064201_010 Hb_064201_010 Hb_000352_130--Hb_064201_010 Hb_004206_040 Hb_004206_040 Hb_000352_130--Hb_004206_040 Hb_001146_070 Hb_001146_070 Hb_000352_130--Hb_001146_070 Hb_000185_090 Hb_000185_090 Hb_000352_130--Hb_000185_090 Hb_005271_030 Hb_005271_030 Hb_000352_130--Hb_005271_030 Hb_000213_060 Hb_000213_060 Hb_000352_130--Hb_000213_060 Hb_064201_010--Hb_001146_070 Hb_064201_010--Hb_005271_030 Hb_000329_620 Hb_000329_620 Hb_064201_010--Hb_000329_620 Hb_003376_170 Hb_003376_170 Hb_064201_010--Hb_003376_170 Hb_000061_410 Hb_000061_410 Hb_064201_010--Hb_000061_410 Hb_000779_040 Hb_000779_040 Hb_004206_040--Hb_000779_040 Hb_000792_110 Hb_000792_110 Hb_004206_040--Hb_000792_110 Hb_000890_220 Hb_000890_220 Hb_004206_040--Hb_000890_220 Hb_000016_180 Hb_000016_180 Hb_004206_040--Hb_000016_180 Hb_035360_010 Hb_035360_010 Hb_004206_040--Hb_035360_010 Hb_025048_040 Hb_025048_040 Hb_004206_040--Hb_025048_040 Hb_001146_070--Hb_005271_030 Hb_000175_530 Hb_000175_530 Hb_001146_070--Hb_000175_530 Hb_029464_010 Hb_029464_010 Hb_001146_070--Hb_029464_010 Hb_007158_030 Hb_007158_030 Hb_001146_070--Hb_007158_030 Hb_001017_100 Hb_001017_100 Hb_001146_070--Hb_001017_100 Hb_113216_010 Hb_113216_010 Hb_000185_090--Hb_113216_010 Hb_000211_090 Hb_000211_090 Hb_000185_090--Hb_000211_090 Hb_003666_050 Hb_003666_050 Hb_000185_090--Hb_003666_050 Hb_000185_090--Hb_000779_040 Hb_000185_090--Hb_000016_180 Hb_019871_020 Hb_019871_020 Hb_000185_090--Hb_019871_020 Hb_005271_030--Hb_029464_010 Hb_009193_130 Hb_009193_130 Hb_005271_030--Hb_009193_130 Hb_005271_030--Hb_007158_030 Hb_002506_110 Hb_002506_110 Hb_005271_030--Hb_002506_110 Hb_005271_030--Hb_001017_100 Hb_010189_010 Hb_010189_010 Hb_000213_060--Hb_010189_010 Hb_000213_060--Hb_113216_010 Hb_000213_060--Hb_000016_180 Hb_000213_060--Hb_000185_090 Hb_000466_060 Hb_000466_060 Hb_000213_060--Hb_000466_060 Hb_002918_070 Hb_002918_070 Hb_000213_060--Hb_002918_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.92045 1.62605 0.029057 0.065197 10.3281 11.2674
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.42333 1.57655 0.584496 0.615368 0

CAGE analysis