Hb_000866_160

Information

Type -
Description -
Location Contig866: 134588-135858
Sequence    

Annotation

kegg
ID cic:CICLE_v10024048mg
description hypothetical protein
nr
ID XP_011036280.1
description PREDICTED: elicitor-responsive protein 3 [Populus euphratica]
swissprot
ID -
description -
trembl
ID A0A067H2E9
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g047744mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000866_160 0.0 - - PREDICTED: elicitor-responsive protein 3 [Populus euphratica]
2 Hb_031089_060 0.0015844002 - - -
3 Hb_000487_390 0.1331848879 - - PREDICTED: putative pumilio homolog 21 [Jatropha curcas]
4 Hb_001263_020 0.138004306 - - -
5 Hb_012656_010 0.1392026645 - - -
6 Hb_003812_010 0.1488418955 - - -
7 Hb_001754_220 0.2011181818 - - -
8 Hb_019654_160 0.2649939927 - - Zinc finger protein GIS2 [Medicago truncatula]
9 Hb_012799_090 0.266397012 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like [Jatropha curcas]
10 Hb_001798_040 0.3067225103 transcription factor TF Family: NAC hypothetical protein ARALYDRAFT_918808 [Arabidopsis lyrata subsp. lyrata]
11 Hb_000982_030 0.3116081095 - - conserved hypothetical protein [Ricinus communis]
12 Hb_009181_020 0.3316153185 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_007189_020 0.3377514557 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
14 Hb_000326_020 0.3380414757 - - -
15 Hb_000917_250 0.3411997025 - - PREDICTED: coiled-coil domain-containing protein 130-like [Populus euphratica]
16 Hb_000861_090 0.3587647839 - - -
17 Hb_002383_060 0.3612865942 - - PREDICTED: uncharacterized protein LOC102596491 [Solanum tuberosum]
18 Hb_005524_010 0.3739648751 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
19 Hb_000330_180 0.3852698534 - - -
20 Hb_001541_240 0.3902924553 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000866_160 Hb_000866_160 Hb_031089_060 Hb_031089_060 Hb_000866_160--Hb_031089_060 Hb_000487_390 Hb_000487_390 Hb_000866_160--Hb_000487_390 Hb_001263_020 Hb_001263_020 Hb_000866_160--Hb_001263_020 Hb_012656_010 Hb_012656_010 Hb_000866_160--Hb_012656_010 Hb_003812_010 Hb_003812_010 Hb_000866_160--Hb_003812_010 Hb_001754_220 Hb_001754_220 Hb_000866_160--Hb_001754_220 Hb_031089_060--Hb_000487_390 Hb_031089_060--Hb_001263_020 Hb_031089_060--Hb_012656_010 Hb_031089_060--Hb_003812_010 Hb_031089_060--Hb_001754_220 Hb_000487_390--Hb_001263_020 Hb_000487_390--Hb_012656_010 Hb_000487_390--Hb_003812_010 Hb_000487_390--Hb_001754_220 Hb_019654_160 Hb_019654_160 Hb_000487_390--Hb_019654_160 Hb_001263_020--Hb_012656_010 Hb_001263_020--Hb_003812_010 Hb_001263_020--Hb_001754_220 Hb_001263_020--Hb_019654_160 Hb_012799_090 Hb_012799_090 Hb_001263_020--Hb_012799_090 Hb_012656_010--Hb_003812_010 Hb_012656_010--Hb_001754_220 Hb_012656_010--Hb_019654_160 Hb_012656_010--Hb_012799_090 Hb_003812_010--Hb_001754_220 Hb_003812_010--Hb_019654_160 Hb_003812_010--Hb_012799_090 Hb_001754_220--Hb_019654_160 Hb_001754_220--Hb_012799_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.125852 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.119098 0 0 0

CAGE analysis