Hb_012799_090

Information

Type -
Description -
Location Contig12799: 42815-43318
Sequence    

Annotation

kegg
ID rcu:RCOM_1496390
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012090268.1
description PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like [Jatropha curcas]
swissprot
ID Q9LTV8
description Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
trembl
ID B9R9C6
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1496390 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012799_090 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like [Jatropha curcas]
2 Hb_019654_160 0.0014507864 - - Zinc finger protein GIS2 [Medicago truncatula]
3 Hb_001754_220 0.0668354228 - - -
4 Hb_003812_010 0.1195132334 - - -
5 Hb_012656_010 0.1291563464 - - -
6 Hb_001263_020 0.1303537643 - - -
7 Hb_000487_390 0.1351662728 - - PREDICTED: putative pumilio homolog 21 [Jatropha curcas]
8 Hb_000866_160 0.266397012 - - PREDICTED: elicitor-responsive protein 3 [Populus euphratica]
9 Hb_031089_060 0.2679395574 - - -
10 Hb_001798_040 0.2905822507 transcription factor TF Family: NAC hypothetical protein ARALYDRAFT_918808 [Arabidopsis lyrata subsp. lyrata]
11 Hb_000016_070 0.3420318509 transcription factor TF Family: M-type PREDICTED: MADS-box protein SOC1-like, partial [Nicotiana sylvestris]
12 Hb_000019_020 0.3420318509 - - hypothetical protein POPTR_0017s08820g, partial [Populus trichocarpa]
13 Hb_000019_160 0.3420318509 - - PREDICTED: RING finger protein 10 isoform X2 [Jatropha curcas]
14 Hb_000029_230 0.3420318509 - - hypothetical protein ARALYDRAFT_496947 [Arabidopsis lyrata subsp. lyrata]
15 Hb_000032_170 0.3420318509 - - -
16 Hb_000042_170 0.3420318509 transcription factor TF Family: ULT Protein ULTRAPETALA2, putative [Ricinus communis]
17 Hb_000050_210 0.3420318509 - - PREDICTED: uncharacterized protein LOC105797515 [Gossypium raimondii]
18 Hb_000083_100 0.3420318509 - - -
19 Hb_000094_270 0.3420318509 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
20 Hb_000099_100 0.3420318509 - - -

Gene co-expression network

sample Hb_012799_090 Hb_012799_090 Hb_019654_160 Hb_019654_160 Hb_012799_090--Hb_019654_160 Hb_001754_220 Hb_001754_220 Hb_012799_090--Hb_001754_220 Hb_003812_010 Hb_003812_010 Hb_012799_090--Hb_003812_010 Hb_012656_010 Hb_012656_010 Hb_012799_090--Hb_012656_010 Hb_001263_020 Hb_001263_020 Hb_012799_090--Hb_001263_020 Hb_000487_390 Hb_000487_390 Hb_012799_090--Hb_000487_390 Hb_019654_160--Hb_001754_220 Hb_019654_160--Hb_003812_010 Hb_019654_160--Hb_012656_010 Hb_019654_160--Hb_001263_020 Hb_019654_160--Hb_000487_390 Hb_001754_220--Hb_003812_010 Hb_001754_220--Hb_012656_010 Hb_001754_220--Hb_001263_020 Hb_001754_220--Hb_000487_390 Hb_003812_010--Hb_012656_010 Hb_003812_010--Hb_001263_020 Hb_003812_010--Hb_000487_390 Hb_012656_010--Hb_001263_020 Hb_012656_010--Hb_000487_390 Hb_001263_020--Hb_000487_390 Hb_000866_160 Hb_000866_160 Hb_000487_390--Hb_000866_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0570785 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.208147 0 0 0

CAGE analysis