Hb_019654_160

Information

Type -
Description -
Location Contig19654: 115340-116801
Sequence    

Annotation

kegg
ID mtr:MTR_2g030270
description Zinc finger protein GIS2
nr
ID XP_003594532.1
description Zinc finger protein GIS2 [Medicago truncatula]
swissprot
ID -
description -
trembl
ID U5FUS7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s01952g PE=4 SV=1
Gene Ontology
ID GO:0003676
description zinc finger protein gis2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019654_160 0.0 - - Zinc finger protein GIS2 [Medicago truncatula]
2 Hb_012799_090 0.0014507864 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like [Jatropha curcas]
3 Hb_001754_220 0.0653885022 - - -
4 Hb_003812_010 0.1180739925 - - -
5 Hb_012656_010 0.1277188721 - - -
6 Hb_001263_020 0.1289165165 - - -
7 Hb_000487_390 0.1337299505 - - PREDICTED: putative pumilio homolog 21 [Jatropha curcas]
8 Hb_000866_160 0.2649939927 - - PREDICTED: elicitor-responsive protein 3 [Populus euphratica]
9 Hb_031089_060 0.2665370092 - - -
10 Hb_001798_040 0.2900558337 transcription factor TF Family: NAC hypothetical protein ARALYDRAFT_918808 [Arabidopsis lyrata subsp. lyrata]
11 Hb_000016_070 0.3432483245 transcription factor TF Family: M-type PREDICTED: MADS-box protein SOC1-like, partial [Nicotiana sylvestris]
12 Hb_000019_020 0.3432483245 - - hypothetical protein POPTR_0017s08820g, partial [Populus trichocarpa]
13 Hb_000019_160 0.3432483245 - - PREDICTED: RING finger protein 10 isoform X2 [Jatropha curcas]
14 Hb_000029_230 0.3432483245 - - hypothetical protein ARALYDRAFT_496947 [Arabidopsis lyrata subsp. lyrata]
15 Hb_000032_170 0.3432483245 - - -
16 Hb_000042_170 0.3432483245 transcription factor TF Family: ULT Protein ULTRAPETALA2, putative [Ricinus communis]
17 Hb_000050_210 0.3432483245 - - PREDICTED: uncharacterized protein LOC105797515 [Gossypium raimondii]
18 Hb_000083_100 0.3432483245 - - -
19 Hb_000094_270 0.3432483245 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
20 Hb_000099_100 0.3432483245 - - -

Gene co-expression network

sample Hb_019654_160 Hb_019654_160 Hb_012799_090 Hb_012799_090 Hb_019654_160--Hb_012799_090 Hb_001754_220 Hb_001754_220 Hb_019654_160--Hb_001754_220 Hb_003812_010 Hb_003812_010 Hb_019654_160--Hb_003812_010 Hb_012656_010 Hb_012656_010 Hb_019654_160--Hb_012656_010 Hb_001263_020 Hb_001263_020 Hb_019654_160--Hb_001263_020 Hb_000487_390 Hb_000487_390 Hb_019654_160--Hb_000487_390 Hb_012799_090--Hb_001754_220 Hb_012799_090--Hb_003812_010 Hb_012799_090--Hb_012656_010 Hb_012799_090--Hb_001263_020 Hb_012799_090--Hb_000487_390 Hb_001754_220--Hb_003812_010 Hb_001754_220--Hb_012656_010 Hb_001754_220--Hb_001263_020 Hb_001754_220--Hb_000487_390 Hb_003812_010--Hb_012656_010 Hb_003812_010--Hb_001263_020 Hb_003812_010--Hb_000487_390 Hb_012656_010--Hb_001263_020 Hb_012656_010--Hb_000487_390 Hb_001263_020--Hb_000487_390 Hb_000866_160 Hb_000866_160 Hb_000487_390--Hb_000866_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0377199 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.136415 0 0 0

CAGE analysis