Hb_001754_220

Information

Type -
Description -
Location Contig1754: 144813-145046
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001754_220 0.0 - - -
2 Hb_003812_010 0.0528958163 - - -
3 Hb_012656_010 0.062596248 - - -
4 Hb_001263_020 0.0638011297 - - -
5 Hb_019654_160 0.0653885022 - - Zinc finger protein GIS2 [Medicago truncatula]
6 Hb_012799_090 0.0668354228 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like [Jatropha curcas]
7 Hb_000487_390 0.0686443919 - - PREDICTED: putative pumilio homolog 21 [Jatropha curcas]
8 Hb_000866_160 0.2011181818 - - PREDICTED: elicitor-responsive protein 3 [Populus euphratica]
9 Hb_031089_060 0.2026794274 - - -
10 Hb_001798_040 0.2726875218 transcription factor TF Family: NAC hypothetical protein ARALYDRAFT_918808 [Arabidopsis lyrata subsp. lyrata]
11 Hb_005524_010 0.3589145733 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
12 Hb_000982_030 0.3638029062 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001541_240 0.367082209 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000330_180 0.3680555274 - - -
15 Hb_000326_020 0.3833043306 - - -
16 Hb_002498_090 0.3855519856 - - -
17 Hb_000853_380 0.3864839628 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000016_070 0.3981557227 transcription factor TF Family: M-type PREDICTED: MADS-box protein SOC1-like, partial [Nicotiana sylvestris]
19 Hb_000019_020 0.3981557227 - - hypothetical protein POPTR_0017s08820g, partial [Populus trichocarpa]
20 Hb_000019_160 0.3981557227 - - PREDICTED: RING finger protein 10 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001754_220 Hb_001754_220 Hb_003812_010 Hb_003812_010 Hb_001754_220--Hb_003812_010 Hb_012656_010 Hb_012656_010 Hb_001754_220--Hb_012656_010 Hb_001263_020 Hb_001263_020 Hb_001754_220--Hb_001263_020 Hb_019654_160 Hb_019654_160 Hb_001754_220--Hb_019654_160 Hb_012799_090 Hb_012799_090 Hb_001754_220--Hb_012799_090 Hb_000487_390 Hb_000487_390 Hb_001754_220--Hb_000487_390 Hb_003812_010--Hb_012656_010 Hb_003812_010--Hb_001263_020 Hb_003812_010--Hb_000487_390 Hb_003812_010--Hb_019654_160 Hb_003812_010--Hb_012799_090 Hb_012656_010--Hb_001263_020 Hb_012656_010--Hb_000487_390 Hb_012656_010--Hb_019654_160 Hb_012656_010--Hb_012799_090 Hb_001263_020--Hb_000487_390 Hb_001263_020--Hb_019654_160 Hb_001263_020--Hb_012799_090 Hb_019654_160--Hb_012799_090 Hb_019654_160--Hb_000487_390 Hb_012799_090--Hb_000487_390 Hb_000866_160 Hb_000866_160 Hb_000487_390--Hb_000866_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.737399 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 1.86639 0 0 0

CAGE analysis