Hb_155932_010

Information

Type -
Description -
Location Contig155932: 130-1011
Sequence    

Annotation

kegg
ID tcc:TCM_018791
description Gag protease polyprotein
nr
ID XP_012468708.1
description PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0B0NGV1
description ATP-dependent zinc metalloprotease FtsH OS=Gossypium arboreum GN=F383_19049 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_155932_010 0.0 - - PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
2 Hb_000246_140 0.226828221 - - xylulose kinase, putative [Ricinus communis]
3 Hb_003636_050 0.2312746503 - - PREDICTED: bark storage protein A-like [Populus euphratica]
4 Hb_136856_010 0.2915206821 - - PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus]
5 Hb_021068_020 0.2918693026 - - -
6 Hb_009066_010 0.29353465 - - -
7 Hb_068347_020 0.2941449626 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
8 Hb_027394_010 0.2941476789 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
9 Hb_089491_010 0.2943054075 - - -
10 Hb_009268_110 0.2945621789 - - PREDICTED: uncharacterized protein LOC102611294 [Citrus sinensis]
11 Hb_013727_010 0.3047403065 - - hypothetical protein JCGZ_08656 [Jatropha curcas]
12 Hb_130775_010 0.3096054795 - - conserved hypothetical protein [Ricinus communis]
13 Hb_013205_010 0.3125636882 - - PREDICTED: putative B3 domain-containing protein At2g27410 [Jatropha curcas]
14 Hb_075642_010 0.3156503854 - - PREDICTED: uncharacterized protein LOC105647831 [Jatropha curcas]
15 Hb_005542_020 0.3200800849 - - lupus la ribonucleoprotein, putative [Ricinus communis]
16 Hb_024505_030 0.3211407383 - - PREDICTED: aspartate aminotransferase, chloroplastic [Jatropha curcas]
17 Hb_000181_040 0.3232614551 transcription factor TF Family: NAC PREDICTED: protein CUP-SHAPED COTYLEDON 2 [Jatropha curcas]
18 Hb_010399_020 0.3249110836 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
19 Hb_179763_010 0.3251355029 - - -
20 Hb_008151_030 0.3265602873 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_155932_010 Hb_155932_010 Hb_000246_140 Hb_000246_140 Hb_155932_010--Hb_000246_140 Hb_003636_050 Hb_003636_050 Hb_155932_010--Hb_003636_050 Hb_136856_010 Hb_136856_010 Hb_155932_010--Hb_136856_010 Hb_021068_020 Hb_021068_020 Hb_155932_010--Hb_021068_020 Hb_009066_010 Hb_009066_010 Hb_155932_010--Hb_009066_010 Hb_068347_020 Hb_068347_020 Hb_155932_010--Hb_068347_020 Hb_075642_010 Hb_075642_010 Hb_000246_140--Hb_075642_010 Hb_000246_140--Hb_003636_050 Hb_003621_010 Hb_003621_010 Hb_000246_140--Hb_003621_010 Hb_007761_010 Hb_007761_010 Hb_000246_140--Hb_007761_010 Hb_128173_010 Hb_128173_010 Hb_000246_140--Hb_128173_010 Hb_076583_010 Hb_076583_010 Hb_003636_050--Hb_076583_010 Hb_005542_020 Hb_005542_020 Hb_003636_050--Hb_005542_020 Hb_013727_010 Hb_013727_010 Hb_003636_050--Hb_013727_010 Hb_064951_010 Hb_064951_010 Hb_003636_050--Hb_064951_010 Hb_105480_010 Hb_105480_010 Hb_003636_050--Hb_105480_010 Hb_111332_010 Hb_111332_010 Hb_003636_050--Hb_111332_010 Hb_136856_010--Hb_021068_020 Hb_136856_010--Hb_009066_010 Hb_089491_010 Hb_089491_010 Hb_136856_010--Hb_089491_010 Hb_009268_110 Hb_009268_110 Hb_136856_010--Hb_009268_110 Hb_136856_010--Hb_068347_020 Hb_027394_010 Hb_027394_010 Hb_136856_010--Hb_027394_010 Hb_021068_020--Hb_009066_010 Hb_021068_020--Hb_068347_020 Hb_021068_020--Hb_027394_010 Hb_021068_020--Hb_089491_010 Hb_021068_020--Hb_009268_110 Hb_009066_010--Hb_068347_020 Hb_009066_010--Hb_027394_010 Hb_009066_010--Hb_089491_010 Hb_009066_010--Hb_009268_110 Hb_068347_020--Hb_027394_010 Hb_013205_010 Hb_013205_010 Hb_068347_020--Hb_013205_010 Hb_068347_020--Hb_089491_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0825621 0.177659
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0495351 0 0 0

CAGE analysis