Hb_075642_010

Information

Type -
Description -
Location Contig75642: 1853-2017
Sequence    

Annotation

kegg
ID rcu:RCOM_1431330
description protein binding protein, putative
nr
ID XP_012089447.1
description PREDICTED: uncharacterized protein LOC105647831 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9RF44
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_1431330 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase topors

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_075642_010 0.0 - - PREDICTED: uncharacterized protein LOC105647831 [Jatropha curcas]
2 Hb_000246_140 0.1432438044 - - xylulose kinase, putative [Ricinus communis]
3 Hb_000003_690 0.1511586707 - - -
4 Hb_002365_010 0.2247072059 - - hypothetical protein CISIN_1g0405342mg, partial [Citrus sinensis]
5 Hb_003621_010 0.2325301197 - - -
6 Hb_005222_010 0.2335897585 - - hypothetical protein MTR_1g033950 [Medicago truncatula]
7 Hb_006692_050 0.2378596215 - - Chloroplastic lipocalin [Theobroma cacao]
8 Hb_042026_010 0.2431131989 - - RNA binding protein, putative [Ricinus communis]
9 Hb_003636_050 0.2456246652 - - PREDICTED: bark storage protein A-like [Populus euphratica]
10 Hb_096490_010 0.2466577801 - - hypothetical protein CICLE_v100210772mg, partial [Citrus clementina]
11 Hb_174005_010 0.2467765702 - - hypothetical protein EUGRSUZ_D00590 [Eucalyptus grandis]
12 Hb_032531_040 0.2507655056 - - E3 ISG15--protein ligase HERC5 [Gossypium arboreum]
13 Hb_001981_080 0.253536069 - - PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1 isoform X4 [Musa acuminata subsp. malaccensis]
14 Hb_007761_010 0.2538586927 - - -
15 Hb_128173_010 0.2547822798 - - PREDICTED: uncharacterized protein LOC104219073 [Nicotiana sylvestris]
16 Hb_001454_110 0.2615243009 - - hypothetical protein POPTR_0026s00250g [Populus trichocarpa]
17 Hb_086287_020 0.262602922 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial [Jatropha curcas]
18 Hb_000002_030 0.2632869526 - - -
19 Hb_124567_010 0.2637138473 - - -
20 Hb_111332_010 0.2648277552 - - Dihydroneopterin aldolase [Morus notabilis]

Gene co-expression network

sample Hb_075642_010 Hb_075642_010 Hb_000246_140 Hb_000246_140 Hb_075642_010--Hb_000246_140 Hb_000003_690 Hb_000003_690 Hb_075642_010--Hb_000003_690 Hb_002365_010 Hb_002365_010 Hb_075642_010--Hb_002365_010 Hb_003621_010 Hb_003621_010 Hb_075642_010--Hb_003621_010 Hb_005222_010 Hb_005222_010 Hb_075642_010--Hb_005222_010 Hb_006692_050 Hb_006692_050 Hb_075642_010--Hb_006692_050 Hb_003636_050 Hb_003636_050 Hb_000246_140--Hb_003636_050 Hb_000246_140--Hb_003621_010 Hb_155932_010 Hb_155932_010 Hb_000246_140--Hb_155932_010 Hb_007761_010 Hb_007761_010 Hb_000246_140--Hb_007761_010 Hb_128173_010 Hb_128173_010 Hb_000246_140--Hb_128173_010 Hb_003702_050 Hb_003702_050 Hb_000003_690--Hb_003702_050 Hb_000003_690--Hb_002365_010 Hb_169488_010 Hb_169488_010 Hb_000003_690--Hb_169488_010 Hb_126398_010 Hb_126398_010 Hb_000003_690--Hb_126398_010 Hb_001981_080 Hb_001981_080 Hb_000003_690--Hb_001981_080 Hb_000002_030 Hb_000002_030 Hb_002365_010--Hb_000002_030 Hb_002365_010--Hb_005222_010 Hb_000316_090 Hb_000316_090 Hb_002365_010--Hb_000316_090 Hb_034579_010 Hb_034579_010 Hb_002365_010--Hb_034579_010 Hb_000800_100 Hb_000800_100 Hb_003621_010--Hb_000800_100 Hb_008202_030 Hb_008202_030 Hb_003621_010--Hb_008202_030 Hb_069868_010 Hb_069868_010 Hb_003621_010--Hb_069868_010 Hb_003621_010--Hb_005222_010 Hb_001544_020 Hb_001544_020 Hb_005222_010--Hb_001544_020 Hb_005222_010--Hb_169488_010 Hb_005222_010--Hb_000003_690 Hb_042026_010 Hb_042026_010 Hb_006692_050--Hb_042026_010 Hb_006692_050--Hb_007761_010 Hb_006692_050--Hb_128173_010 Hb_111332_010 Hb_111332_010 Hb_006692_050--Hb_111332_010 Hb_000795_010 Hb_000795_010 Hb_006692_050--Hb_000795_010 Hb_105480_010 Hb_105480_010 Hb_006692_050--Hb_105480_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 7.5779 118.387
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.36598 10.9622 0 0 0

CAGE analysis