Hb_005222_010

Information

Type -
Description -
Location Contig5222: 2916-3257
Sequence    

Annotation

kegg
ID bvg:104903087
description uncharacterized LOC104903087
nr
ID KEH40735.1
description hypothetical protein MTR_1g033950 [Medicago truncatula]
swissprot
ID -
description -
trembl
ID A0A072VRH5
description Uncharacterized protein OS=Medicago truncatula GN=MTR_1g033950 PE=4 SV=1
Gene Ontology
ID GO:0003676
description retrotransposon unclassified

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005222_010 0.0 - - hypothetical protein MTR_1g033950 [Medicago truncatula]
2 Hb_002365_010 0.201981717 - - hypothetical protein CISIN_1g0405342mg, partial [Citrus sinensis]
3 Hb_001544_020 0.2113194249 - - -
4 Hb_169488_010 0.2297171677 - - PREDICTED: choline monooxygenase, chloroplastic-like [Populus euphratica]
5 Hb_075642_010 0.2335897585 - - PREDICTED: uncharacterized protein LOC105647831 [Jatropha curcas]
6 Hb_000003_690 0.2402685263 - - -
7 Hb_003621_010 0.2463309262 - - -
8 Hb_187459_010 0.2540235616 - - PREDICTED: uncharacterized protein LOC102619199, partial [Citrus sinensis]
9 Hb_003702_050 0.2582870238 - - PREDICTED: uncharacterized protein LOC105649649 [Jatropha curcas]
10 Hb_001981_080 0.2769321283 - - PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1 isoform X4 [Musa acuminata subsp. malaccensis]
11 Hb_096490_010 0.2814068706 - - hypothetical protein CICLE_v100210772mg, partial [Citrus clementina]
12 Hb_174005_010 0.282302597 - - hypothetical protein EUGRSUZ_D00590 [Eucalyptus grandis]
13 Hb_032531_040 0.2849233168 - - E3 ISG15--protein ligase HERC5 [Gossypium arboreum]
14 Hb_000906_050 0.2856296345 - - -
15 Hb_145827_010 0.2899660952 - - hypothetical protein POPTR_0003s13630g [Populus trichocarpa]
16 Hb_000316_090 0.2958984519 - - -
17 Hb_000002_030 0.2961166808 - - -
18 Hb_032531_050 0.3004829994 - - hypothetical protein CICLE_v10003980mg [Citrus clementina]
19 Hb_157340_010 0.303051962 - - hypothetical protein CISIN_1g0109951mg, partial [Citrus sinensis]
20 Hb_000696_320 0.3030794027 - - PREDICTED: uncharacterized protein LOC104884717 [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_005222_010 Hb_005222_010 Hb_002365_010 Hb_002365_010 Hb_005222_010--Hb_002365_010 Hb_001544_020 Hb_001544_020 Hb_005222_010--Hb_001544_020 Hb_169488_010 Hb_169488_010 Hb_005222_010--Hb_169488_010 Hb_075642_010 Hb_075642_010 Hb_005222_010--Hb_075642_010 Hb_000003_690 Hb_000003_690 Hb_005222_010--Hb_000003_690 Hb_003621_010 Hb_003621_010 Hb_005222_010--Hb_003621_010 Hb_000002_030 Hb_000002_030 Hb_002365_010--Hb_000002_030 Hb_002365_010--Hb_000003_690 Hb_000316_090 Hb_000316_090 Hb_002365_010--Hb_000316_090 Hb_034579_010 Hb_034579_010 Hb_002365_010--Hb_034579_010 Hb_002365_010--Hb_075642_010 Hb_001544_020--Hb_169488_010 Hb_003702_050 Hb_003702_050 Hb_001544_020--Hb_003702_050 Hb_001981_080 Hb_001981_080 Hb_001544_020--Hb_001981_080 Hb_000931_030 Hb_000931_030 Hb_001544_020--Hb_000931_030 Hb_001544_020--Hb_002365_010 Hb_169488_010--Hb_003702_050 Hb_001951_280 Hb_001951_280 Hb_169488_010--Hb_001951_280 Hb_063511_010 Hb_063511_010 Hb_169488_010--Hb_063511_010 Hb_015091_010 Hb_015091_010 Hb_169488_010--Hb_015091_010 Hb_169488_010--Hb_000003_690 Hb_000246_140 Hb_000246_140 Hb_075642_010--Hb_000246_140 Hb_075642_010--Hb_000003_690 Hb_075642_010--Hb_003621_010 Hb_006692_050 Hb_006692_050 Hb_075642_010--Hb_006692_050 Hb_000003_690--Hb_003702_050 Hb_126398_010 Hb_126398_010 Hb_000003_690--Hb_126398_010 Hb_000003_690--Hb_001981_080 Hb_000800_100 Hb_000800_100 Hb_003621_010--Hb_000800_100 Hb_008202_030 Hb_008202_030 Hb_003621_010--Hb_008202_030 Hb_069868_010 Hb_069868_010 Hb_003621_010--Hb_069868_010 Hb_003621_010--Hb_000246_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.207715 0 0 0 3.59064
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.27492 0.432208 0 0 0

CAGE analysis