Hb_000931_030

Information

Type -
Description -
Location Contig931: 57196-69577
Sequence    

Annotation

kegg
ID pop:POPTR_0005s07760g
description POPTRDRAFT_558541; hypothetical protein
nr
ID XP_011031007.1
description PREDICTED: uncharacterized protein LOC105130278 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9H531
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s07760g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62855: 64531-64941 , PASA_asmbl_62856: 66213-66727
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000931_030 0.0 - - PREDICTED: uncharacterized protein LOC105130278 [Populus euphratica]
2 Hb_000025_100 0.2261932124 - - -
3 Hb_114839_010 0.2396378212 - - -
4 Hb_001544_020 0.2430531164 - - -
5 Hb_141383_010 0.2437394991 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
6 Hb_171529_010 0.2446222923 - - -
7 Hb_126112_010 0.2552230169 - - PREDICTED: uncharacterized protein LOC105636715 [Jatropha curcas]
8 Hb_004098_030 0.258211214 - - TMV resistance protein N, putative [Ricinus communis]
9 Hb_021888_110 0.259024271 - - -
10 Hb_002205_200 0.2597844454 - - PREDICTED: uncharacterized protein LOC105649174 [Jatropha curcas]
11 Hb_008442_010 0.2722229744 - - PREDICTED: nudix hydrolase 16, mitochondrial-like [Citrus sinensis]
12 Hb_036285_010 0.277197484 - - -
13 Hb_144101_010 0.2775768725 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Vitis vinifera]
14 Hb_007574_060 0.2793107197 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 27-like [Jatropha curcas]
15 Hb_004586_450 0.2805908188 - - -
16 Hb_007333_010 0.2835830819 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_000048_100 0.2847266351 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000347_510 0.2864451152 - - actin binding protein, putative [Ricinus communis]
19 Hb_156526_010 0.2890766378 - - PREDICTED: uncharacterized protein LOC105636715 [Jatropha curcas]
20 Hb_004502_050 0.2917904431 - - hypothetical protein POPTR_1488s00200g [Populus trichocarpa]

Gene co-expression network

sample Hb_000931_030 Hb_000931_030 Hb_000025_100 Hb_000025_100 Hb_000931_030--Hb_000025_100 Hb_114839_010 Hb_114839_010 Hb_000931_030--Hb_114839_010 Hb_001544_020 Hb_001544_020 Hb_000931_030--Hb_001544_020 Hb_141383_010 Hb_141383_010 Hb_000931_030--Hb_141383_010 Hb_171529_010 Hb_171529_010 Hb_000931_030--Hb_171529_010 Hb_126112_010 Hb_126112_010 Hb_000931_030--Hb_126112_010 Hb_000025_100--Hb_126112_010 Hb_121550_010 Hb_121550_010 Hb_000025_100--Hb_121550_010 Hb_008442_010 Hb_008442_010 Hb_000025_100--Hb_008442_010 Hb_147123_010 Hb_147123_010 Hb_000025_100--Hb_147123_010 Hb_021888_110 Hb_021888_110 Hb_000025_100--Hb_021888_110 Hb_071923_010 Hb_071923_010 Hb_000025_100--Hb_071923_010 Hb_000189_360 Hb_000189_360 Hb_114839_010--Hb_000189_360 Hb_000086_330 Hb_000086_330 Hb_114839_010--Hb_000086_330 Hb_042404_010 Hb_042404_010 Hb_114839_010--Hb_042404_010 Hb_004098_030 Hb_004098_030 Hb_114839_010--Hb_004098_030 Hb_070820_010 Hb_070820_010 Hb_114839_010--Hb_070820_010 Hb_169488_010 Hb_169488_010 Hb_001544_020--Hb_169488_010 Hb_005222_010 Hb_005222_010 Hb_001544_020--Hb_005222_010 Hb_003702_050 Hb_003702_050 Hb_001544_020--Hb_003702_050 Hb_001981_080 Hb_001981_080 Hb_001544_020--Hb_001981_080 Hb_002365_010 Hb_002365_010 Hb_001544_020--Hb_002365_010 Hb_141383_010--Hb_114839_010 Hb_004732_010 Hb_004732_010 Hb_141383_010--Hb_004732_010 Hb_115784_010 Hb_115784_010 Hb_141383_010--Hb_115784_010 Hb_007451_060 Hb_007451_060 Hb_141383_010--Hb_007451_060 Hb_035746_010 Hb_035746_010 Hb_141383_010--Hb_035746_010 Hb_000347_510 Hb_000347_510 Hb_171529_010--Hb_000347_510 Hb_004586_450 Hb_004586_450 Hb_171529_010--Hb_004586_450 Hb_007574_060 Hb_007574_060 Hb_171529_010--Hb_007574_060 Hb_171529_010--Hb_008442_010 Hb_078604_010 Hb_078604_010 Hb_171529_010--Hb_078604_010 Hb_000523_100 Hb_000523_100 Hb_126112_010--Hb_000523_100 Hb_003061_010 Hb_003061_010 Hb_126112_010--Hb_003061_010 Hb_156526_010 Hb_156526_010 Hb_126112_010--Hb_156526_010 Hb_126112_010--Hb_021888_110 Hb_003581_010 Hb_003581_010 Hb_126112_010--Hb_003581_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.203497 0.130047 0.0378523 0.0132932 0 0.733118
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.372295 0.205008 0 0.011717 0

CAGE analysis