Hb_114839_010

Information

Type -
Description -
Location Contig114839: 318-4129
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 013_G07.ab1: 480-1152 , 034_L06.ab1: 393-1152 , 038_B07.ab1: 427-1192

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_114839_010 0.0 - - -
2 Hb_000189_360 0.1942450438 - - Calcium-transporting ATPase 12, plasma membrane-type [Morus notabilis]
3 Hb_000086_330 0.2291920009 - - PREDICTED: glutathione gamma-glutamylcysteinyltransferase 1 [Jatropha curcas]
4 Hb_000931_030 0.2396378212 - - PREDICTED: uncharacterized protein LOC105130278 [Populus euphratica]
5 Hb_042404_010 0.2408501982 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
6 Hb_004098_030 0.2412868868 - - TMV resistance protein N, putative [Ricinus communis]
7 Hb_070820_010 0.2427396409 - - hypothetical protein B456_008G232800 [Gossypium raimondii]
8 Hb_004204_090 0.2487559077 - - hypothetical protein JCGZ_11697 [Jatropha curcas]
9 Hb_035746_010 0.2506445884 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
10 Hb_133311_010 0.2526531778 - - PREDICTED: U-box domain-containing protein 62-like isoform X1 [Glycine max]
11 Hb_141383_010 0.2578105469 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
12 Hb_007333_010 0.2607262392 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_009139_010 0.2665881959 - - putative Phospholipid-Diacylglycerol acyltransferase [Elaeis guineensis]
14 Hb_000179_150 0.269457469 - - hypothetical protein ZEAMMB73_153699 [Zea mays]
15 Hb_018247_010 0.2720415915 - - hypothetical protein JCGZ_26531 [Jatropha curcas]
16 Hb_000046_020 0.2732215771 - - -
17 Hb_000381_080 0.2756085078 transcription factor TF Family: SNF2 PREDICTED: DNA repair protein RAD16 [Jatropha curcas]
18 Hb_002471_170 0.275700692 - - -
19 Hb_030765_010 0.2770632525 desease resistance Gene Name: ABC_tran PREDICTED: ABC transporter G family member 11-like isoform X1 [Solanum lycopersicum]
20 Hb_002821_010 0.2777025179 - - PREDICTED: nucleolar protein 16 [Jatropha curcas]

Gene co-expression network

sample Hb_114839_010 Hb_114839_010 Hb_000189_360 Hb_000189_360 Hb_114839_010--Hb_000189_360 Hb_000086_330 Hb_000086_330 Hb_114839_010--Hb_000086_330 Hb_000931_030 Hb_000931_030 Hb_114839_010--Hb_000931_030 Hb_042404_010 Hb_042404_010 Hb_114839_010--Hb_042404_010 Hb_004098_030 Hb_004098_030 Hb_114839_010--Hb_004098_030 Hb_070820_010 Hb_070820_010 Hb_114839_010--Hb_070820_010 Hb_007451_060 Hb_007451_060 Hb_000189_360--Hb_007451_060 Hb_003992_110 Hb_003992_110 Hb_000189_360--Hb_003992_110 Hb_009139_010 Hb_009139_010 Hb_000189_360--Hb_009139_010 Hb_000713_020 Hb_000713_020 Hb_000189_360--Hb_000713_020 Hb_000179_150 Hb_000179_150 Hb_000189_360--Hb_000179_150 Hb_000086_330--Hb_070820_010 Hb_000445_330 Hb_000445_330 Hb_000086_330--Hb_000445_330 Hb_002301_240 Hb_002301_240 Hb_000086_330--Hb_002301_240 Hb_001047_140 Hb_001047_140 Hb_000086_330--Hb_001047_140 Hb_004502_080 Hb_004502_080 Hb_000086_330--Hb_004502_080 Hb_030765_010 Hb_030765_010 Hb_000086_330--Hb_030765_010 Hb_000025_100 Hb_000025_100 Hb_000931_030--Hb_000025_100 Hb_001544_020 Hb_001544_020 Hb_000931_030--Hb_001544_020 Hb_141383_010 Hb_141383_010 Hb_000931_030--Hb_141383_010 Hb_171529_010 Hb_171529_010 Hb_000931_030--Hb_171529_010 Hb_126112_010 Hb_126112_010 Hb_000931_030--Hb_126112_010 Hb_042404_010--Hb_000445_330 Hb_029982_010 Hb_029982_010 Hb_042404_010--Hb_029982_010 Hb_136765_010 Hb_136765_010 Hb_042404_010--Hb_136765_010 Hb_086859_010 Hb_086859_010 Hb_042404_010--Hb_086859_010 Hb_000331_500 Hb_000331_500 Hb_042404_010--Hb_000331_500 Hb_042404_010--Hb_070820_010 Hb_004098_030--Hb_070820_010 Hb_002821_010 Hb_002821_010 Hb_004098_030--Hb_002821_010 Hb_162999_010 Hb_162999_010 Hb_004098_030--Hb_162999_010 Hb_004098_030--Hb_086859_010 Hb_001488_110 Hb_001488_110 Hb_004098_030--Hb_001488_110 Hb_004098_030--Hb_042404_010 Hb_070820_010--Hb_002821_010 Hb_003398_060 Hb_003398_060 Hb_070820_010--Hb_003398_060 Hb_048197_010 Hb_048197_010 Hb_070820_010--Hb_048197_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
608.975 492.111 7.67712 67.872 35.8753 846.709
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
994.71 786.234 0 0.0286351 0

CAGE analysis