Hb_070820_010

Information

Type -
Description -
Location Contig70820: 46-1241
Sequence    

Annotation

kegg
ID tcc:TCM_015905
description H(+)-ATPase 11 isoform 1
nr
ID KJB51812.1
description hypothetical protein B456_008G232800 [Gossypium raimondii]
swissprot
ID P23980
description Plasma membrane ATPase 2 (Fragment) OS=Solanum lycopersicum GN=LHA2 PE=3 SV=1
trembl
ID A0A0D2Q0B6
description Gossypium raimondii chromosome 8, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_008G232800 PE=4 SV=1
Gene Ontology
ID GO:0016021
description plasma membrane atpase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_070820_010 0.0 - - hypothetical protein B456_008G232800 [Gossypium raimondii]
2 Hb_000086_330 0.115091138 - - PREDICTED: glutathione gamma-glutamylcysteinyltransferase 1 [Jatropha curcas]
3 Hb_002821_010 0.1929475009 - - PREDICTED: nucleolar protein 16 [Jatropha curcas]
4 Hb_004098_030 0.1930228096 - - TMV resistance protein N, putative [Ricinus communis]
5 Hb_042404_010 0.2033172354 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
6 Hb_003398_060 0.205755449 - - PREDICTED: rRNA methyltransferase 2, mitochondrial isoform X1 [Jatropha curcas]
7 Hb_048197_010 0.2064767229 - - -
8 Hb_002301_240 0.2071365187 - - auxin-repressed protein-like protein ARP1 [Manihot esculenta]
9 Hb_000445_330 0.2205514509 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001047_140 0.2210832992 - - -
11 Hb_001248_020 0.2250622743 - - PREDICTED: uncharacterized protein At2g23090-like [Jatropha curcas]
12 Hb_056196_070 0.225992954 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA26-like [Jatropha curcas]
13 Hb_012395_100 0.2274310349 - - eukaryotic translation initiation factor 4e, putative [Ricinus communis]
14 Hb_036369_010 0.2326927051 - - -
15 Hb_004070_030 0.2340758341 - - PREDICTED: phosphatidate cytidylyltransferase, mitochondrial isoform X2 [Jatropha curcas]
16 Hb_004502_050 0.2363168627 - - hypothetical protein POPTR_1488s00200g [Populus trichocarpa]
17 Hb_005565_030 0.2378809188 - - PREDICTED: uncharacterized protein LOC105633107 isoform X1 [Jatropha curcas]
18 Hb_120221_010 0.2385058667 - - -
19 Hb_170305_020 0.2401228304 - - hypothetical protein JCGZ_23578 [Jatropha curcas]
20 Hb_023675_010 0.2411805784 - - -

Gene co-expression network

sample Hb_070820_010 Hb_070820_010 Hb_000086_330 Hb_000086_330 Hb_070820_010--Hb_000086_330 Hb_002821_010 Hb_002821_010 Hb_070820_010--Hb_002821_010 Hb_004098_030 Hb_004098_030 Hb_070820_010--Hb_004098_030 Hb_042404_010 Hb_042404_010 Hb_070820_010--Hb_042404_010 Hb_003398_060 Hb_003398_060 Hb_070820_010--Hb_003398_060 Hb_048197_010 Hb_048197_010 Hb_070820_010--Hb_048197_010 Hb_000445_330 Hb_000445_330 Hb_000086_330--Hb_000445_330 Hb_002301_240 Hb_002301_240 Hb_000086_330--Hb_002301_240 Hb_001047_140 Hb_001047_140 Hb_000086_330--Hb_001047_140 Hb_004502_080 Hb_004502_080 Hb_000086_330--Hb_004502_080 Hb_030765_010 Hb_030765_010 Hb_000086_330--Hb_030765_010 Hb_120221_010 Hb_120221_010 Hb_002821_010--Hb_120221_010 Hb_000381_080 Hb_000381_080 Hb_002821_010--Hb_000381_080 Hb_084934_010 Hb_084934_010 Hb_002821_010--Hb_084934_010 Hb_027472_090 Hb_027472_090 Hb_002821_010--Hb_027472_090 Hb_170305_020 Hb_170305_020 Hb_002821_010--Hb_170305_020 Hb_000366_100 Hb_000366_100 Hb_002821_010--Hb_000366_100 Hb_004098_030--Hb_002821_010 Hb_162999_010 Hb_162999_010 Hb_004098_030--Hb_162999_010 Hb_086859_010 Hb_086859_010 Hb_004098_030--Hb_086859_010 Hb_001488_110 Hb_001488_110 Hb_004098_030--Hb_001488_110 Hb_004098_030--Hb_042404_010 Hb_042404_010--Hb_000445_330 Hb_029982_010 Hb_029982_010 Hb_042404_010--Hb_029982_010 Hb_136765_010 Hb_136765_010 Hb_042404_010--Hb_136765_010 Hb_042404_010--Hb_086859_010 Hb_000331_500 Hb_000331_500 Hb_042404_010--Hb_000331_500 Hb_001248_020 Hb_001248_020 Hb_003398_060--Hb_001248_020 Hb_036369_010 Hb_036369_010 Hb_003398_060--Hb_036369_010 Hb_003453_010 Hb_003453_010 Hb_003398_060--Hb_003453_010 Hb_000984_190 Hb_000984_190 Hb_003398_060--Hb_000984_190 Hb_017895_050 Hb_017895_050 Hb_003398_060--Hb_017895_050 Hb_025246_010 Hb_025246_010 Hb_003398_060--Hb_025246_010 Hb_048197_010--Hb_036369_010 Hb_048197_010--Hb_170305_020 Hb_048197_010--Hb_001248_020 Hb_048197_010--Hb_002821_010 Hb_077562_040 Hb_077562_040 Hb_048197_010--Hb_077562_040 Hb_023675_010 Hb_023675_010 Hb_048197_010--Hb_023675_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.340308 0.145681 0 0.0224468 0.207384 0.575684
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.748967 0.294478 0 0.05948 0

CAGE analysis