Hb_086859_010

Information

Type -
Description -
Location Contig86859: 233-2726
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_086859_010 0.0 - - -
2 Hb_029982_010 0.1233308021 - - hypothetical protein CICLE_v10006145mg [Citrus clementina]
3 Hb_011161_070 0.169082827 - - PREDICTED: kynurenine--oxoglutarate transaminase 1-like isoform X1 [Populus euphratica]
4 Hb_142522_010 0.1754679713 - - -
5 Hb_042404_010 0.1954173926 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
6 Hb_000221_100 0.2050269156 - - hypothetical protein POPTR_0006s07000g [Populus trichocarpa]
7 Hb_000329_530 0.205716791 - - Uncharacterized protein TCM_038736 [Theobroma cacao]
8 Hb_001741_050 0.2105596766 - - -
9 Hb_000046_020 0.2196118547 - - -
10 Hb_178345_010 0.220009606 - - hypothetical protein PHAVU_004G084200g [Phaseolus vulgaris]
11 Hb_078604_010 0.2212696434 - - -
12 Hb_008078_030 0.2219844471 - - -
13 Hb_004098_030 0.2224036796 - - TMV resistance protein N, putative [Ricinus communis]
14 Hb_002821_010 0.2228909797 - - PREDICTED: nucleolar protein 16 [Jatropha curcas]
15 Hb_012395_100 0.2246644281 - - eukaryotic translation initiation factor 4e, putative [Ricinus communis]
16 Hb_170305_020 0.2252699403 - - hypothetical protein JCGZ_23578 [Jatropha curcas]
17 Hb_044662_040 0.226044275 - - -
18 Hb_077562_040 0.2295440595 - - hypothetical protein JCGZ_24573 [Jatropha curcas]
19 Hb_002863_010 0.2309462531 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
20 Hb_145761_010 0.2324662066 - - -

Gene co-expression network

sample Hb_086859_010 Hb_086859_010 Hb_029982_010 Hb_029982_010 Hb_086859_010--Hb_029982_010 Hb_011161_070 Hb_011161_070 Hb_086859_010--Hb_011161_070 Hb_142522_010 Hb_142522_010 Hb_086859_010--Hb_142522_010 Hb_042404_010 Hb_042404_010 Hb_086859_010--Hb_042404_010 Hb_000221_100 Hb_000221_100 Hb_086859_010--Hb_000221_100 Hb_000329_530 Hb_000329_530 Hb_086859_010--Hb_000329_530 Hb_029982_010--Hb_042404_010 Hb_188382_010 Hb_188382_010 Hb_029982_010--Hb_188382_010 Hb_004048_010 Hb_004048_010 Hb_029982_010--Hb_004048_010 Hb_001405_130 Hb_001405_130 Hb_029982_010--Hb_001405_130 Hb_029982_010--Hb_142522_010 Hb_008078_030 Hb_008078_030 Hb_011161_070--Hb_008078_030 Hb_011161_070--Hb_142522_010 Hb_171554_090 Hb_171554_090 Hb_011161_070--Hb_171554_090 Hb_004048_140 Hb_004048_140 Hb_011161_070--Hb_004048_140 Hb_003073_050 Hb_003073_050 Hb_011161_070--Hb_003073_050 Hb_142522_010--Hb_008078_030 Hb_001021_230 Hb_001021_230 Hb_142522_010--Hb_001021_230 Hb_015675_060 Hb_015675_060 Hb_142522_010--Hb_015675_060 Hb_004502_080 Hb_004502_080 Hb_142522_010--Hb_004502_080 Hb_000445_330 Hb_000445_330 Hb_042404_010--Hb_000445_330 Hb_136765_010 Hb_136765_010 Hb_042404_010--Hb_136765_010 Hb_000331_500 Hb_000331_500 Hb_042404_010--Hb_000331_500 Hb_070820_010 Hb_070820_010 Hb_042404_010--Hb_070820_010 Hb_145761_010 Hb_145761_010 Hb_000221_100--Hb_145761_010 Hb_002918_280 Hb_002918_280 Hb_000221_100--Hb_002918_280 Hb_007625_020 Hb_007625_020 Hb_000221_100--Hb_007625_020 Hb_007451_030 Hb_007451_030 Hb_000221_100--Hb_007451_030 Hb_000977_140 Hb_000977_140 Hb_000221_100--Hb_000977_140 Hb_000680_150 Hb_000680_150 Hb_000221_100--Hb_000680_150 Hb_001741_050 Hb_001741_050 Hb_000329_530--Hb_001741_050 Hb_002742_010 Hb_002742_010 Hb_000329_530--Hb_002742_010 Hb_004449_010 Hb_004449_010 Hb_000329_530--Hb_004449_010 Hb_002188_100 Hb_002188_100 Hb_000329_530--Hb_002188_100 Hb_000329_530--Hb_188382_010 Hb_162999_010 Hb_162999_010 Hb_000329_530--Hb_162999_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0973418 0.0272712 0.0244923 0 0.128247 0.168235
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.149613 0.176442 0 0 0

CAGE analysis