Hb_015675_060

Information

Type -
Description -
Location Contig15675: 88768-90245
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015675_060 0.0 - - -
2 Hb_004116_110 0.1491865848 - - hypothetical protein MTR_3g064100 [Medicago truncatula]
3 Hb_188382_010 0.1705853314 - - Ran GTPase binding protein, putative [Ricinus communis]
4 Hb_142522_010 0.200307957 - - -
5 Hb_029982_010 0.2026660884 - - hypothetical protein CICLE_v10006145mg [Citrus clementina]
6 Hb_002742_010 0.2045644692 - - PREDICTED: uncharacterized protein LOC104115978 [Nicotiana tomentosiformis]
7 Hb_004691_040 0.2062973591 - - PREDICTED: uncharacterized protein LOC105775124 [Gossypium raimondii]
8 Hb_048197_010 0.2147490355 - - -
9 Hb_001821_120 0.2177718509 - - PREDICTED: uncharacterized protein LOC105643956 [Jatropha curcas]
10 Hb_000563_530 0.2222357152 - - PREDICTED: uncharacterized protein LOC105643453 [Jatropha curcas]
11 Hb_000175_040 0.2252528072 - - hypothetical protein JCGZ_06119 [Jatropha curcas]
12 Hb_004502_080 0.2254531952 - - hypothetical protein JCGZ_23578 [Jatropha curcas]
13 Hb_036369_010 0.2274082618 - - -
14 Hb_023675_010 0.2320043533 - - -
15 Hb_029888_020 0.2349365427 - - hypothetical protein PHAVU_007G268100g [Phaseolus vulgaris]
16 Hb_000329_530 0.2349818945 - - Uncharacterized protein TCM_038736 [Theobroma cacao]
17 Hb_000366_100 0.2354879681 - - 60S ribosomal protein L7aA [Hevea brasiliensis]
18 Hb_012395_100 0.236306616 - - eukaryotic translation initiation factor 4e, putative [Ricinus communis]
19 Hb_011310_060 0.239528885 - - PREDICTED: uncharacterized protein At2g34160-like [Jatropha curcas]
20 Hb_151930_020 0.2397923985 - - Wound-induced protein WIN1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_015675_060 Hb_015675_060 Hb_004116_110 Hb_004116_110 Hb_015675_060--Hb_004116_110 Hb_188382_010 Hb_188382_010 Hb_015675_060--Hb_188382_010 Hb_142522_010 Hb_142522_010 Hb_015675_060--Hb_142522_010 Hb_029982_010 Hb_029982_010 Hb_015675_060--Hb_029982_010 Hb_002742_010 Hb_002742_010 Hb_015675_060--Hb_002742_010 Hb_004691_040 Hb_004691_040 Hb_015675_060--Hb_004691_040 Hb_004116_110--Hb_004691_040 Hb_048197_010 Hb_048197_010 Hb_004116_110--Hb_048197_010 Hb_174107_010 Hb_174107_010 Hb_004116_110--Hb_174107_010 Hb_004116_110--Hb_188382_010 Hb_004116_110--Hb_002742_010 Hb_039548_010 Hb_039548_010 Hb_188382_010--Hb_039548_010 Hb_030765_010 Hb_030765_010 Hb_188382_010--Hb_030765_010 Hb_188382_010--Hb_002742_010 Hb_188382_010--Hb_029982_010 Hb_000562_080 Hb_000562_080 Hb_188382_010--Hb_000562_080 Hb_086859_010 Hb_086859_010 Hb_142522_010--Hb_086859_010 Hb_008078_030 Hb_008078_030 Hb_142522_010--Hb_008078_030 Hb_142522_010--Hb_029982_010 Hb_001021_230 Hb_001021_230 Hb_142522_010--Hb_001021_230 Hb_004502_080 Hb_004502_080 Hb_142522_010--Hb_004502_080 Hb_029982_010--Hb_086859_010 Hb_042404_010 Hb_042404_010 Hb_029982_010--Hb_042404_010 Hb_004048_010 Hb_004048_010 Hb_029982_010--Hb_004048_010 Hb_001405_130 Hb_001405_130 Hb_029982_010--Hb_001405_130 Hb_001141_400 Hb_001141_400 Hb_002742_010--Hb_001141_400 Hb_000329_530 Hb_000329_530 Hb_002742_010--Hb_000329_530 Hb_000373_300 Hb_000373_300 Hb_002742_010--Hb_000373_300 Hb_028365_010 Hb_028365_010 Hb_002742_010--Hb_028365_010 Hb_003023_050 Hb_003023_050 Hb_002742_010--Hb_003023_050 Hb_035905_010 Hb_035905_010 Hb_004691_040--Hb_035905_010 Hb_004691_040--Hb_002742_010 Hb_004691_040--Hb_000373_300 Hb_004055_060 Hb_004055_060 Hb_004691_040--Hb_004055_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.35936 0 0 0.146522 1.48705 2.52042
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.88296 3.96323 0 0.28365 0.209594

CAGE analysis