Hb_002742_010

Information

Type -
Description -
Location Contig2742: 20158-32360
Sequence    

Annotation

kegg
ID pda:103697812
description uncharacterized LOC103697812
nr
ID XP_009625019.1
description PREDICTED: uncharacterized protein LOC104115978 [Nicotiana tomentosiformis]
swissprot
ID -
description -
trembl
ID M1DF56
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400037635 PE=4 SV=1
Gene Ontology
ID GO:0003676
description PREDICTED: uncharacterized protein LOC104216022, partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002742_010 0.0 - - PREDICTED: uncharacterized protein LOC104115978 [Nicotiana tomentosiformis]
2 Hb_001141_400 0.1572510418 - - hypothetical protein B456_007G2854002, partial [Gossypium raimondii]
3 Hb_000329_530 0.1826217276 - - Uncharacterized protein TCM_038736 [Theobroma cacao]
4 Hb_188382_010 0.1832416977 - - Ran GTPase binding protein, putative [Ricinus communis]
5 Hb_000373_300 0.1891689237 - - hypothetical protein F775_20382 [Aegilops tauschii]
6 Hb_028365_010 0.195551657 - - PREDICTED: uncharacterized protein LOC105631661 [Jatropha curcas]
7 Hb_003023_050 0.1985054981 - - hypothetical protein POPTR_0013s10320g [Populus trichocarpa]
8 Hb_015675_060 0.2045644692 - - -
9 Hb_000046_020 0.2063355318 - - -
10 Hb_001741_050 0.2089248382 - - -
11 Hb_029982_010 0.213917756 - - hypothetical protein CICLE_v10006145mg [Citrus clementina]
12 Hb_004116_110 0.2164668975 - - hypothetical protein MTR_3g064100 [Medicago truncatula]
13 Hb_004691_040 0.2217277558 - - PREDICTED: uncharacterized protein LOC105775124 [Gossypium raimondii]
14 Hb_145761_010 0.2292417635 - - -
15 Hb_001279_250 0.2318979538 - - PREDICTED: pectate lyase-like [Jatropha curcas]
16 Hb_086859_010 0.2330499028 - - -
17 Hb_000221_100 0.2343720025 - - hypothetical protein POPTR_0006s07000g [Populus trichocarpa]
18 Hb_004055_060 0.2371681409 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 5 [Jatropha curcas]
19 Hb_012779_110 0.2383693717 - - PREDICTED: uncharacterized protein LOC105650717 [Jatropha curcas]
20 Hb_000580_160 0.2393349611 - - Nitrate transporter 1.5 [Morus notabilis]

Gene co-expression network

sample Hb_002742_010 Hb_002742_010 Hb_001141_400 Hb_001141_400 Hb_002742_010--Hb_001141_400 Hb_000329_530 Hb_000329_530 Hb_002742_010--Hb_000329_530 Hb_188382_010 Hb_188382_010 Hb_002742_010--Hb_188382_010 Hb_000373_300 Hb_000373_300 Hb_002742_010--Hb_000373_300 Hb_028365_010 Hb_028365_010 Hb_002742_010--Hb_028365_010 Hb_003023_050 Hb_003023_050 Hb_002742_010--Hb_003023_050 Hb_001141_400--Hb_000373_300 Hb_001141_400--Hb_028365_010 Hb_010128_110 Hb_010128_110 Hb_001141_400--Hb_010128_110 Hb_001141_400--Hb_188382_010 Hb_159085_010 Hb_159085_010 Hb_001141_400--Hb_159085_010 Hb_001741_050 Hb_001741_050 Hb_000329_530--Hb_001741_050 Hb_004449_010 Hb_004449_010 Hb_000329_530--Hb_004449_010 Hb_002188_100 Hb_002188_100 Hb_000329_530--Hb_002188_100 Hb_000329_530--Hb_188382_010 Hb_162999_010 Hb_162999_010 Hb_000329_530--Hb_162999_010 Hb_015675_060 Hb_015675_060 Hb_188382_010--Hb_015675_060 Hb_039548_010 Hb_039548_010 Hb_188382_010--Hb_039548_010 Hb_030765_010 Hb_030765_010 Hb_188382_010--Hb_030765_010 Hb_029982_010 Hb_029982_010 Hb_188382_010--Hb_029982_010 Hb_000562_080 Hb_000562_080 Hb_188382_010--Hb_000562_080 Hb_002741_030 Hb_002741_030 Hb_000373_300--Hb_002741_030 Hb_000861_050 Hb_000861_050 Hb_000373_300--Hb_000861_050 Hb_001143_010 Hb_001143_010 Hb_000373_300--Hb_001143_010 Hb_000373_300--Hb_159085_010 Hb_028365_010--Hb_003023_050 Hb_012779_110 Hb_012779_110 Hb_028365_010--Hb_012779_110 Hb_005410_030 Hb_005410_030 Hb_028365_010--Hb_005410_030 Hb_002843_190 Hb_002843_190 Hb_028365_010--Hb_002843_190 Hb_001109_120 Hb_001109_120 Hb_028365_010--Hb_001109_120 Hb_002221_080 Hb_002221_080 Hb_028365_010--Hb_002221_080 Hb_004055_060 Hb_004055_060 Hb_003023_050--Hb_004055_060 Hb_001279_250 Hb_001279_250 Hb_003023_050--Hb_001279_250 Hb_000580_160 Hb_000580_160 Hb_003023_050--Hb_000580_160 Hb_000052_010 Hb_000052_010 Hb_003023_050--Hb_000052_010 Hb_003023_050--Hb_012779_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.044329 0 0 0 0.0434551 0.0299648
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0673702 0.0795 0 0 0

CAGE analysis