Hb_001741_050

Information

Type -
Description -
Location Contig1741: 57797-59603
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16590: 25601-75427 , PASA_asmbl_16592: 29631-59542 , PASA_asmbl_16593: 58607-59542
cDNA
(Sanger)
(ID:Location)		 011_E23.ab1: 29699-59345 , 051_N09.ab1: 29699-59345

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001741_050 0.0 - - -
2 Hb_000329_530 0.1556163681 - - Uncharacterized protein TCM_038736 [Theobroma cacao]
3 Hb_001195_590 0.1669842822 - - PREDICTED: uncharacterized protein LOC105633753 [Jatropha curcas]
4 Hb_178345_010 0.1687567518 - - hypothetical protein PHAVU_004G084200g [Phaseolus vulgaris]
5 Hb_004449_010 0.1917178526 - - lipase [Ricinus communis]
6 Hb_012395_100 0.2036612099 - - eukaryotic translation initiation factor 4e, putative [Ricinus communis]
7 Hb_000046_020 0.2084569385 - - -
8 Hb_000340_480 0.2087915976 - - -
9 Hb_002742_010 0.2089248382 - - PREDICTED: uncharacterized protein LOC104115978 [Nicotiana tomentosiformis]
10 Hb_004657_010 0.2089483182 - - PREDICTED: uncharacterized protein LOC105639764 [Jatropha curcas]
11 Hb_006557_010 0.2104397345 - - -
12 Hb_086859_010 0.2105596766 - - -
13 Hb_000928_230 0.2154487164 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001980_020 0.2226500766 - - -
15 Hb_004375_060 0.2231248063 - - PREDICTED: myelin transcription factor 1-like isoform X1 [Jatropha curcas]
16 Hb_005590_030 0.2237719301 - - PREDICTED: (S)-coclaurine N-methyltransferase [Jatropha curcas]
17 Hb_000352_150 0.2240945188 - - hypothetical protein JCGZ_11641 [Jatropha curcas]
18 Hb_000221_100 0.2243243368 - - hypothetical protein POPTR_0006s07000g [Populus trichocarpa]
19 Hb_145761_010 0.2251775688 - - -
20 Hb_001178_020 0.22705321 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 3 [Jatropha curcas]

Gene co-expression network

sample Hb_001741_050 Hb_001741_050 Hb_000329_530 Hb_000329_530 Hb_001741_050--Hb_000329_530 Hb_001195_590 Hb_001195_590 Hb_001741_050--Hb_001195_590 Hb_178345_010 Hb_178345_010 Hb_001741_050--Hb_178345_010 Hb_004449_010 Hb_004449_010 Hb_001741_050--Hb_004449_010 Hb_012395_100 Hb_012395_100 Hb_001741_050--Hb_012395_100 Hb_000046_020 Hb_000046_020 Hb_001741_050--Hb_000046_020 Hb_002742_010 Hb_002742_010 Hb_000329_530--Hb_002742_010 Hb_000329_530--Hb_004449_010 Hb_002188_100 Hb_002188_100 Hb_000329_530--Hb_002188_100 Hb_188382_010 Hb_188382_010 Hb_000329_530--Hb_188382_010 Hb_162999_010 Hb_162999_010 Hb_000329_530--Hb_162999_010 Hb_000088_060 Hb_000088_060 Hb_001195_590--Hb_000088_060 Hb_005590_030 Hb_005590_030 Hb_001195_590--Hb_005590_030 Hb_001195_580 Hb_001195_580 Hb_001195_590--Hb_001195_580 Hb_006557_010 Hb_006557_010 Hb_001195_590--Hb_006557_010 Hb_089140_080 Hb_089140_080 Hb_001195_590--Hb_089140_080 Hb_002851_060 Hb_002851_060 Hb_178345_010--Hb_002851_060 Hb_044662_040 Hb_044662_040 Hb_178345_010--Hb_044662_040 Hb_000977_140 Hb_000977_140 Hb_178345_010--Hb_000977_140 Hb_178345_010--Hb_012395_100 Hb_000175_520 Hb_000175_520 Hb_178345_010--Hb_000175_520 Hb_004375_060 Hb_004375_060 Hb_178345_010--Hb_004375_060 Hb_004657_010 Hb_004657_010 Hb_004449_010--Hb_004657_010 Hb_004449_010--Hb_178345_010 Hb_000340_480 Hb_000340_480 Hb_004449_010--Hb_000340_480 Hb_004449_010--Hb_000977_140 Hb_004449_010--Hb_006557_010 Hb_004449_010--Hb_012395_100 Hb_012395_100--Hb_000175_520 Hb_001248_020 Hb_001248_020 Hb_012395_100--Hb_001248_020 Hb_023675_010 Hb_023675_010 Hb_012395_100--Hb_023675_010 Hb_036369_010 Hb_036369_010 Hb_012395_100--Hb_036369_010 Hb_004545_160 Hb_004545_160 Hb_012395_100--Hb_004545_160 Hb_004852_020 Hb_004852_020 Hb_012395_100--Hb_004852_020 Hb_000221_100 Hb_000221_100 Hb_000046_020--Hb_000221_100 Hb_145761_010 Hb_145761_010 Hb_000046_020--Hb_145761_010 Hb_065642_010 Hb_065642_010 Hb_000046_020--Hb_065642_010 Hb_000046_020--Hb_002742_010 Hb_086859_010 Hb_086859_010 Hb_000046_020--Hb_086859_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.9228 0.720842 0.0988602 0 18.6024 21.4646
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.8126 13.3551 0 0 0

CAGE analysis