Hb_000046_020

Information

Type -
Description -
Location Contig46: 25993-26642
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000046_020 0.0 - - -
2 Hb_000221_100 0.1972741457 - - hypothetical protein POPTR_0006s07000g [Populus trichocarpa]
3 Hb_145761_010 0.2005362064 - - -
4 Hb_065642_010 0.2031358509 - - -
5 Hb_002742_010 0.2063355318 - - PREDICTED: uncharacterized protein LOC104115978 [Nicotiana tomentosiformis]
6 Hb_001741_050 0.2084569385 - - -
7 Hb_086859_010 0.2196118547 - - -
8 Hb_042404_010 0.2294705766 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
9 Hb_031862_050 0.2310330427 - - Cell division cycle protein, putative [Ricinus communis]
10 Hb_004098_030 0.2319052002 - - TMV resistance protein N, putative [Ricinus communis]
11 Hb_029982_010 0.2319381771 - - hypothetical protein CICLE_v10006145mg [Citrus clementina]
12 Hb_010128_110 0.2366989355 - - PREDICTED: uncharacterized protein LOC105632071 [Jatropha curcas]
13 Hb_048197_010 0.2367535715 - - -
14 Hb_002843_190 0.2396407446 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 7 isoform X1 [Jatropha curcas]
15 Hb_028365_010 0.2409716253 - - PREDICTED: uncharacterized protein LOC105631661 [Jatropha curcas]
16 Hb_001141_400 0.2425900273 - - hypothetical protein B456_007G2854002, partial [Gossypium raimondii]
17 Hb_001143_010 0.2428360438 - - -
18 Hb_001980_020 0.2437055025 - - -
19 Hb_004060_010 0.243996753 - - -
20 Hb_002471_170 0.2443802895 - - -

Gene co-expression network

sample Hb_000046_020 Hb_000046_020 Hb_000221_100 Hb_000221_100 Hb_000046_020--Hb_000221_100 Hb_145761_010 Hb_145761_010 Hb_000046_020--Hb_145761_010 Hb_065642_010 Hb_065642_010 Hb_000046_020--Hb_065642_010 Hb_002742_010 Hb_002742_010 Hb_000046_020--Hb_002742_010 Hb_001741_050 Hb_001741_050 Hb_000046_020--Hb_001741_050 Hb_086859_010 Hb_086859_010 Hb_000046_020--Hb_086859_010 Hb_000221_100--Hb_145761_010 Hb_002918_280 Hb_002918_280 Hb_000221_100--Hb_002918_280 Hb_007625_020 Hb_007625_020 Hb_000221_100--Hb_007625_020 Hb_007451_030 Hb_007451_030 Hb_000221_100--Hb_007451_030 Hb_000977_140 Hb_000977_140 Hb_000221_100--Hb_000977_140 Hb_000680_150 Hb_000680_150 Hb_000221_100--Hb_000680_150 Hb_145761_010--Hb_000680_150 Hb_003777_070 Hb_003777_070 Hb_145761_010--Hb_003777_070 Hb_145761_010--Hb_002918_280 Hb_145761_010--Hb_000977_140 Hb_000183_070 Hb_000183_070 Hb_145761_010--Hb_000183_070 Hb_002843_190 Hb_002843_190 Hb_065642_010--Hb_002843_190 Hb_007044_210 Hb_007044_210 Hb_065642_010--Hb_007044_210 Hb_003018_110 Hb_003018_110 Hb_065642_010--Hb_003018_110 Hb_028365_010 Hb_028365_010 Hb_065642_010--Hb_028365_010 Hb_000373_290 Hb_000373_290 Hb_065642_010--Hb_000373_290 Hb_001141_400 Hb_001141_400 Hb_002742_010--Hb_001141_400 Hb_000329_530 Hb_000329_530 Hb_002742_010--Hb_000329_530 Hb_188382_010 Hb_188382_010 Hb_002742_010--Hb_188382_010 Hb_000373_300 Hb_000373_300 Hb_002742_010--Hb_000373_300 Hb_002742_010--Hb_028365_010 Hb_003023_050 Hb_003023_050 Hb_002742_010--Hb_003023_050 Hb_001741_050--Hb_000329_530 Hb_001195_590 Hb_001195_590 Hb_001741_050--Hb_001195_590 Hb_178345_010 Hb_178345_010 Hb_001741_050--Hb_178345_010 Hb_004449_010 Hb_004449_010 Hb_001741_050--Hb_004449_010 Hb_012395_100 Hb_012395_100 Hb_001741_050--Hb_012395_100 Hb_029982_010 Hb_029982_010 Hb_086859_010--Hb_029982_010 Hb_011161_070 Hb_011161_070 Hb_086859_010--Hb_011161_070 Hb_142522_010 Hb_142522_010 Hb_086859_010--Hb_142522_010 Hb_042404_010 Hb_042404_010 Hb_086859_010--Hb_042404_010 Hb_086859_010--Hb_000221_100 Hb_086859_010--Hb_000329_530
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.62441 1.59519 0 0 3.36349 5.20931
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.15403 9.26565 0 0 0

CAGE analysis