Hb_011161_070

Information

Type -
Description -
Location Contig11161: 48660-49708
Sequence    

Annotation

kegg
ID pop:POPTR_0002s08650g
description POPTRDRAFT_551478; hypothetical protein
nr
ID XP_011027572.1
description PREDICTED: kynurenine--oxoglutarate transaminase 1-like isoform X1 [Populus euphratica]
swissprot
ID P77806
description Methionine aminotransferase OS=Escherichia coli (strain K12) GN=ybdL PE=1 SV=1
trembl
ID B9GUD2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s08650g PE=4 SV=2
Gene Ontology
ID GO:0008483
description pyridoxal phosphate-dependent transferases superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011161_070 0.0 - - PREDICTED: kynurenine--oxoglutarate transaminase 1-like isoform X1 [Populus euphratica]
2 Hb_086859_010 0.169082827 - - -
3 Hb_008078_030 0.1865018598 - - -
4 Hb_142522_010 0.2103743335 - - -
5 Hb_171554_090 0.211065703 - - PREDICTED: 10 kDa chaperonin [Jatropha curcas]
6 Hb_004048_140 0.2213319908 - - -
7 Hb_003073_050 0.231720677 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os03g0620400-like [Jatropha curcas]
8 Hb_029982_010 0.233030486 - - hypothetical protein CICLE_v10006145mg [Citrus clementina]
9 Hb_007017_060 0.2332606007 - - PREDICTED: 5-formyltetrahydrofolate cyclo-ligase, mitochondrial-like [Jatropha curcas]
10 Hb_003849_080 0.2426809364 - - PREDICTED: sufE-like protein 2, chloroplastic isoform X2 [Jatropha curcas]
11 Hb_000012_180 0.2427542327 - - conserved hypothetical protein [Ricinus communis]
12 Hb_044662_040 0.2430259254 - - -
13 Hb_003029_080 0.2478391639 - - peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis]
14 Hb_006261_040 0.2479346392 - - PREDICTED: uncharacterized protein LOC105646602 [Jatropha curcas]
15 Hb_002759_180 0.2483065091 - - PREDICTED: snakin-2-like [Jatropha curcas]
16 Hb_004607_120 0.2513938228 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 8 [Jatropha curcas]
17 Hb_006501_150 0.2530822417 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002498_180 0.2534275928 - - PREDICTED: U3 small nucleolar RNA-associated protein 6 homolog [Jatropha curcas]
19 Hb_033080_010 0.2536340543 - - -
20 Hb_004032_060 0.2544601588 - - elongation factor 1 gamma-like protein, partial [Ipomoea nil]

Gene co-expression network

sample Hb_011161_070 Hb_011161_070 Hb_086859_010 Hb_086859_010 Hb_011161_070--Hb_086859_010 Hb_008078_030 Hb_008078_030 Hb_011161_070--Hb_008078_030 Hb_142522_010 Hb_142522_010 Hb_011161_070--Hb_142522_010 Hb_171554_090 Hb_171554_090 Hb_011161_070--Hb_171554_090 Hb_004048_140 Hb_004048_140 Hb_011161_070--Hb_004048_140 Hb_003073_050 Hb_003073_050 Hb_011161_070--Hb_003073_050 Hb_029982_010 Hb_029982_010 Hb_086859_010--Hb_029982_010 Hb_086859_010--Hb_142522_010 Hb_042404_010 Hb_042404_010 Hb_086859_010--Hb_042404_010 Hb_000221_100 Hb_000221_100 Hb_086859_010--Hb_000221_100 Hb_000329_530 Hb_000329_530 Hb_086859_010--Hb_000329_530 Hb_003029_080 Hb_003029_080 Hb_008078_030--Hb_003029_080 Hb_008078_030--Hb_142522_010 Hb_001811_040 Hb_001811_040 Hb_008078_030--Hb_001811_040 Hb_145761_010 Hb_145761_010 Hb_008078_030--Hb_145761_010 Hb_008078_030--Hb_000221_100 Hb_142522_010--Hb_029982_010 Hb_001021_230 Hb_001021_230 Hb_142522_010--Hb_001021_230 Hb_015675_060 Hb_015675_060 Hb_142522_010--Hb_015675_060 Hb_004502_080 Hb_004502_080 Hb_142522_010--Hb_004502_080 Hb_004502_030 Hb_004502_030 Hb_171554_090--Hb_004502_030 Hb_044662_040 Hb_044662_040 Hb_171554_090--Hb_044662_040 Hb_025236_040 Hb_025236_040 Hb_171554_090--Hb_025236_040 Hb_001951_260 Hb_001951_260 Hb_171554_090--Hb_001951_260 Hb_000058_040 Hb_000058_040 Hb_171554_090--Hb_000058_040 Hb_003633_130 Hb_003633_130 Hb_171554_090--Hb_003633_130 Hb_007017_060 Hb_007017_060 Hb_004048_140--Hb_007017_060 Hb_017417_010 Hb_017417_010 Hb_004048_140--Hb_017417_010 Hb_009801_010 Hb_009801_010 Hb_004048_140--Hb_009801_010 Hb_001473_190 Hb_001473_190 Hb_004048_140--Hb_001473_190 Hb_004324_020 Hb_004324_020 Hb_004048_140--Hb_004324_020 Hb_107847_010 Hb_107847_010 Hb_004048_140--Hb_107847_010 Hb_002045_140 Hb_002045_140 Hb_003073_050--Hb_002045_140 Hb_156526_010 Hb_156526_010 Hb_003073_050--Hb_156526_010 Hb_006018_070 Hb_006018_070 Hb_003073_050--Hb_006018_070 Hb_005511_100 Hb_005511_100 Hb_003073_050--Hb_005511_100 Hb_003073_050--Hb_171554_090 Hb_004241_040 Hb_004241_040 Hb_003073_050--Hb_004241_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.914005 0.223172 0.476324 0 1.26854 1.12159
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.651105 1.63834 0 0 0.103047

CAGE analysis