Hb_002843_190

Information

Type transcription factor
Description TF Family: GRF
Location Contig2843: 178989-180935
Sequence    

Annotation

kegg
ID pop:POPTR_0015s00860g
description POPTRDRAFT_666072; hypothetical protein
nr
ID XP_012086613.1
description PREDICTED: growth-regulating factor 7 isoform X1 [Jatropha curcas]
swissprot
ID Q9SU44
description Growth-regulating factor 8 OS=Arabidopsis thaliana GN=GRF8 PE=2 SV=1
trembl
ID A0A067LEL6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10610 PE=4 SV=1
Gene Ontology
ID GO:0005634
description growth-regulating factor 7 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29765: 179528-180093 , PASA_asmbl_29766: 180100-180332
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002843_190 0.0 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 7 isoform X1 [Jatropha curcas]
2 Hb_028365_010 0.1605496704 - - PREDICTED: uncharacterized protein LOC105631661 [Jatropha curcas]
3 Hb_027751_040 0.1638034364 - - PREDICTED: uncharacterized protein LOC105637052 [Jatropha curcas]
4 Hb_027751_030 0.1735290058 - - -
5 Hb_010128_110 0.1767079858 - - PREDICTED: uncharacterized protein LOC105632071 [Jatropha curcas]
6 Hb_003992_120 0.2030502916 - - hypothetical protein MTR_6g089560 [Medicago truncatula]
7 Hb_001980_020 0.2071212041 - - -
8 Hb_005410_030 0.211313491 - - glutaredoxin 2 [Hevea brasiliensis]
9 Hb_003756_010 0.2183845056 - - PREDICTED: uncharacterized protein LOC105642108 [Jatropha curcas]
10 Hb_065642_010 0.2210112362 - - -
11 Hb_007849_030 0.2236661257 - - l-allo-threonine aldolase, putative [Ricinus communis]
12 Hb_004060_010 0.2247833398 - - -
13 Hb_001109_120 0.2316477124 - - PREDICTED: acyl-CoA-binding protein-like [Nelumbo nucifera]
14 Hb_001141_400 0.2347876376 - - hypothetical protein B456_007G2854002, partial [Gossypium raimondii]
15 Hb_003745_010 0.2368186788 transcription factor TF Family: AP2 hypothetical protein JCGZ_03155 [Jatropha curcas]
16 Hb_000046_020 0.2396407446 - - -
17 Hb_000614_330 0.2397837543 - - hypothetical protein POPTR_0008s18070g [Populus trichocarpa]
18 Hb_002094_020 0.2457641935 - - PREDICTED: alpha-copaene synthase-like [Jatropha curcas]
19 Hb_145761_010 0.2492650311 - - -
20 Hb_000861_050 0.2498828763 - - PREDICTED: transcription elongation factor SPT6-like isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_002843_190 Hb_002843_190 Hb_028365_010 Hb_028365_010 Hb_002843_190--Hb_028365_010 Hb_027751_040 Hb_027751_040 Hb_002843_190--Hb_027751_040 Hb_027751_030 Hb_027751_030 Hb_002843_190--Hb_027751_030 Hb_010128_110 Hb_010128_110 Hb_002843_190--Hb_010128_110 Hb_003992_120 Hb_003992_120 Hb_002843_190--Hb_003992_120 Hb_001980_020 Hb_001980_020 Hb_002843_190--Hb_001980_020 Hb_003023_050 Hb_003023_050 Hb_028365_010--Hb_003023_050 Hb_012779_110 Hb_012779_110 Hb_028365_010--Hb_012779_110 Hb_005410_030 Hb_005410_030 Hb_028365_010--Hb_005410_030 Hb_001109_120 Hb_001109_120 Hb_028365_010--Hb_001109_120 Hb_002221_080 Hb_002221_080 Hb_028365_010--Hb_002221_080 Hb_003745_010 Hb_003745_010 Hb_027751_040--Hb_003745_010 Hb_027751_040--Hb_027751_030 Hb_012662_010 Hb_012662_010 Hb_027751_040--Hb_012662_010 Hb_001993_020 Hb_001993_020 Hb_027751_040--Hb_001993_020 Hb_003756_010 Hb_003756_010 Hb_027751_040--Hb_003756_010 Hb_002094_020 Hb_002094_020 Hb_027751_030--Hb_002094_020 Hb_000284_160 Hb_000284_160 Hb_027751_030--Hb_000284_160 Hb_026766_010 Hb_026766_010 Hb_027751_030--Hb_026766_010 Hb_001230_010 Hb_001230_010 Hb_027751_030--Hb_001230_010 Hb_001631_080 Hb_001631_080 Hb_010128_110--Hb_001631_080 Hb_000175_040 Hb_000175_040 Hb_010128_110--Hb_000175_040 Hb_001141_400 Hb_001141_400 Hb_010128_110--Hb_001141_400 Hb_010128_110--Hb_028365_010 Hb_010128_110--Hb_003756_010 Hb_010812_090 Hb_010812_090 Hb_003992_120--Hb_010812_090 Hb_035905_010 Hb_035905_010 Hb_003992_120--Hb_035905_010 Hb_003992_120--Hb_010128_110 Hb_003992_120--Hb_001141_400 Hb_003992_120--Hb_026766_010 Hb_000352_150 Hb_000352_150 Hb_001980_020--Hb_000352_150 Hb_003777_070 Hb_003777_070 Hb_001980_020--Hb_003777_070 Hb_170116_010 Hb_170116_010 Hb_001980_020--Hb_170116_010 Hb_003253_010 Hb_003253_010 Hb_001980_020--Hb_003253_010 Hb_002875_090 Hb_002875_090 Hb_001980_020--Hb_002875_090 Hb_007810_050 Hb_007810_050 Hb_001980_020--Hb_007810_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.3761 0.11423 0.344468 0.0596863 5.62907 4.62034
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.3712 12.3113 0.732562 0.0912668 0

CAGE analysis