Hb_003018_110

Information

Type -
Description -
Location Contig3018: 53579-56681
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 006_L01r.ab1: 56567-62884

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003018_110 0.0 - - -
2 Hb_005545_030 0.1303853903 - - PREDICTED: uncharacterized protein LOC105645697 [Jatropha curcas]
3 Hb_002681_040 0.1550856138 - - PREDICTED: ribosomal RNA-processing protein 8 [Jatropha curcas]
4 Hb_000680_150 0.1787538273 - - PREDICTED: protein STU1-like [Jatropha curcas]
5 Hb_073973_170 0.1827725174 - - PREDICTED: uncharacterized protein LOC105638918 [Jatropha curcas]
6 Hb_004046_040 0.1854280058 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 4-like [Jatropha curcas]
7 Hb_002918_280 0.1868416492 - - hypothetical protein POPTR_0004s04800g [Populus trichocarpa]
8 Hb_000012_180 0.1886901176 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001386_130 0.189011442 - - Mitochondrial import receptor subunit TOM20, putative [Ricinus communis]
10 Hb_000221_100 0.1896483615 - - hypothetical protein POPTR_0006s07000g [Populus trichocarpa]
11 Hb_010883_210 0.1924473608 - - PREDICTED: selenoprotein K [Jatropha curcas]
12 Hb_001405_050 0.1928050681 - - PREDICTED: uncharacterized protein LOC100500641 [Glycine max]
13 Hb_000768_050 0.193952225 - - hypothetical protein RCOM_0845740 [Ricinus communis]
14 Hb_001514_020 0.194586739 - - PREDICTED: protein DCL, chloroplastic-like [Jatropha curcas]
15 Hb_006452_190 0.1954226939 - - PREDICTED: 3-isopropylmalate dehydrogenase 2, chloroplastic-like [Jatropha curcas]
16 Hb_004137_030 0.19615704 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003688_100 0.199166397 - - Uncharacterized protein TCM_002515 [Theobroma cacao]
18 Hb_000590_090 0.2025671132 - - PREDICTED: sulfate transporter 4.1, chloroplastic-like isoform X1 [Jatropha curcas]
19 Hb_002078_430 0.2037595803 - - hypothetical protein PRUPE_ppa014280mg [Prunus persica]
20 Hb_002619_010 0.2047625629 - - -

Gene co-expression network

sample Hb_003018_110 Hb_003018_110 Hb_005545_030 Hb_005545_030 Hb_003018_110--Hb_005545_030 Hb_002681_040 Hb_002681_040 Hb_003018_110--Hb_002681_040 Hb_000680_150 Hb_000680_150 Hb_003018_110--Hb_000680_150 Hb_073973_170 Hb_073973_170 Hb_003018_110--Hb_073973_170 Hb_004046_040 Hb_004046_040 Hb_003018_110--Hb_004046_040 Hb_002918_280 Hb_002918_280 Hb_003018_110--Hb_002918_280 Hb_005545_030--Hb_002681_040 Hb_005545_030--Hb_004046_040 Hb_006452_190 Hb_006452_190 Hb_005545_030--Hb_006452_190 Hb_006096_040 Hb_006096_040 Hb_005545_030--Hb_006096_040 Hb_001405_050 Hb_001405_050 Hb_005545_030--Hb_001405_050 Hb_002681_040--Hb_001405_050 Hb_010449_020 Hb_010449_020 Hb_002681_040--Hb_010449_020 Hb_000768_050 Hb_000768_050 Hb_002681_040--Hb_000768_050 Hb_003688_100 Hb_003688_100 Hb_002681_040--Hb_003688_100 Hb_002681_040--Hb_000680_150 Hb_001386_130 Hb_001386_130 Hb_000680_150--Hb_001386_130 Hb_000590_090 Hb_000590_090 Hb_000680_150--Hb_000590_090 Hb_007451_030 Hb_007451_030 Hb_000680_150--Hb_007451_030 Hb_001514_020 Hb_001514_020 Hb_000680_150--Hb_001514_020 Hb_001493_100 Hb_001493_100 Hb_000680_150--Hb_001493_100 Hb_004137_030 Hb_004137_030 Hb_073973_170--Hb_004137_030 Hb_002619_010 Hb_002619_010 Hb_073973_170--Hb_002619_010 Hb_001956_050 Hb_001956_050 Hb_073973_170--Hb_001956_050 Hb_000714_020 Hb_000714_020 Hb_073973_170--Hb_000714_020 Hb_073973_170--Hb_001405_050 Hb_027380_040 Hb_027380_040 Hb_073973_170--Hb_027380_040 Hb_004046_040--Hb_006096_040 Hb_006501_150 Hb_006501_150 Hb_004046_040--Hb_006501_150 Hb_000789_090 Hb_000789_090 Hb_004046_040--Hb_000789_090 Hb_004046_040--Hb_002681_040 Hb_004046_040--Hb_001405_050 Hb_010883_210 Hb_010883_210 Hb_002918_280--Hb_010883_210 Hb_084934_010 Hb_084934_010 Hb_002918_280--Hb_084934_010 Hb_005031_070 Hb_005031_070 Hb_002918_280--Hb_005031_070 Hb_000221_100 Hb_000221_100 Hb_002918_280--Hb_000221_100 Hb_002918_280--Hb_000680_150 Hb_002918_280--Hb_001386_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.9312 2.42012 2.96605 1.26861 8.42675 6.11525
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.7046 11.3635 0.381326 1.85065 0

CAGE analysis