Hb_000789_090

Information

Type -
Description -
Location Contig789: 43143-43643
Sequence    

Annotation

kegg
ID rcu:RCOM_1049300
description hypothetical protein
nr
ID ADR71293.1
description hypothetical protein 17 [Hevea brasiliensis]
swissprot
ID -
description -
trembl
ID I3NMQ6
description Uncharacterized protein OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58209: 43388-44128
cDNA
(Sanger)
(ID:Location)		 006_O08.ab1: 43388-43755 , 011_L04.ab1: 43387-43766 , 013_K03.ab1: 43388-43766 , 014_M12.ab1: 43388-43766 , 016_K05.ab1: 43382-44022 , 028_O23.ab1: 43415-43762 , 035_M03.ab1: 43384-43766 , 037_E15.ab1: 43587-43766 , 038_N18.ab1: 43388-43766 , 050_K06.ab1: 43388-43766

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000789_090 0.0 - - hypothetical protein 17 [Hevea brasiliensis]
2 Hb_002284_090 0.1010661346 - - PREDICTED: outer envelope pore protein 21B, chloroplastic [Jatropha curcas]
3 Hb_004046_040 0.1115848248 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 4-like [Jatropha curcas]
4 Hb_000699_130 0.1130081235 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000438_170 0.115337445 - - -
6 Hb_012675_090 0.1192521744 - - PREDICTED: DNA-directed RNA polymerase II subunit 4-like isoform X1 [Citrus sinensis]
7 Hb_001124_120 0.122304943 - - PREDICTED: uncharacterized protein LOC105631831 isoform X1 [Jatropha curcas]
8 Hb_000392_440 0.1231027284 - - PREDICTED: nuclear ribonuclease Z isoform X1 [Jatropha curcas]
9 Hb_000109_090 0.1234790962 - - PREDICTED: deoxyhypusine hydroxylase [Jatropha curcas]
10 Hb_001348_070 0.1268158268 - - Uncharacterized protein isoform 1 [Theobroma cacao]
11 Hb_006816_220 0.1285261824 - - PREDICTED: zinc finger matrin-type protein 2 [Jatropha curcas]
12 Hb_003398_130 0.1287716086 - - PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30 [Gossypium raimondii]
13 Hb_002349_040 0.1310877967 - - PREDICTED: RNA pseudouridine synthase 5 [Jatropha curcas]
14 Hb_003682_060 0.131453263 - - PREDICTED: uncharacterized protein LOC105633833 isoform X1 [Jatropha curcas]
15 Hb_001404_100 0.1314762259 - - PREDICTED: eukaryotic translation initiation factor 3 subunit K [Gossypium raimondii]
16 Hb_002928_130 0.1315107831 - - PREDICTED: small nuclear ribonucleoprotein Sm D3 [Jatropha curcas]
17 Hb_004994_170 0.1318996805 - - PREDICTED: uncharacterized protein LOC105643024 [Jatropha curcas]
18 Hb_007154_020 0.1324054066 - - -
19 Hb_000599_110 0.1330320682 - - conserved hypothetical protein [Ricinus communis]
20 Hb_010661_030 0.1344457058 - - hypothetical protein PHAVU_009G146200g [Phaseolus vulgaris]

Gene co-expression network

sample Hb_000789_090 Hb_000789_090 Hb_002284_090 Hb_002284_090 Hb_000789_090--Hb_002284_090 Hb_004046_040 Hb_004046_040 Hb_000789_090--Hb_004046_040 Hb_000699_130 Hb_000699_130 Hb_000789_090--Hb_000699_130 Hb_000438_170 Hb_000438_170 Hb_000789_090--Hb_000438_170 Hb_012675_090 Hb_012675_090 Hb_000789_090--Hb_012675_090 Hb_001124_120 Hb_001124_120 Hb_000789_090--Hb_001124_120 Hb_003398_130 Hb_003398_130 Hb_002284_090--Hb_003398_130 Hb_001278_110 Hb_001278_110 Hb_002284_090--Hb_001278_110 Hb_005306_170 Hb_005306_170 Hb_002284_090--Hb_005306_170 Hb_000392_440 Hb_000392_440 Hb_002284_090--Hb_000392_440 Hb_000486_010 Hb_000486_010 Hb_002284_090--Hb_000486_010 Hb_000887_020 Hb_000887_020 Hb_002284_090--Hb_000887_020 Hb_006096_040 Hb_006096_040 Hb_004046_040--Hb_006096_040 Hb_006501_150 Hb_006501_150 Hb_004046_040--Hb_006501_150 Hb_005545_030 Hb_005545_030 Hb_004046_040--Hb_005545_030 Hb_002681_040 Hb_002681_040 Hb_004046_040--Hb_002681_040 Hb_001405_050 Hb_001405_050 Hb_004046_040--Hb_001405_050 Hb_007919_060 Hb_007919_060 Hb_000699_130--Hb_007919_060 Hb_001014_010 Hb_001014_010 Hb_000699_130--Hb_001014_010 Hb_022250_030 Hb_022250_030 Hb_000699_130--Hb_022250_030 Hb_005245_130 Hb_005245_130 Hb_000699_130--Hb_005245_130 Hb_000699_130--Hb_001124_120 Hb_031939_010 Hb_031939_010 Hb_000699_130--Hb_031939_010 Hb_000462_140 Hb_000462_140 Hb_000438_170--Hb_000462_140 Hb_000109_090 Hb_000109_090 Hb_000438_170--Hb_000109_090 Hb_000438_170--Hb_002284_090 Hb_000710_010 Hb_000710_010 Hb_000438_170--Hb_000710_010 Hb_028347_010 Hb_028347_010 Hb_000438_170--Hb_028347_010 Hb_010128_130 Hb_010128_130 Hb_012675_090--Hb_010128_130 Hb_003126_040 Hb_003126_040 Hb_012675_090--Hb_003126_040 Hb_143766_090 Hb_143766_090 Hb_012675_090--Hb_143766_090 Hb_001741_140 Hb_001741_140 Hb_012675_090--Hb_001741_140 Hb_001629_110 Hb_001629_110 Hb_012675_090--Hb_001629_110 Hb_010810_050 Hb_010810_050 Hb_012675_090--Hb_010810_050 Hb_000085_060 Hb_000085_060 Hb_001124_120--Hb_000085_060 Hb_150360_030 Hb_150360_030 Hb_001124_120--Hb_150360_030 Hb_002349_040 Hb_002349_040 Hb_001124_120--Hb_002349_040 Hb_001124_120--Hb_031939_010 Hb_007218_080 Hb_007218_080 Hb_001124_120--Hb_007218_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
509.328 104.182 248.194 42.0952 572.562 306.533
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
631.412 465.674 214.806 228.802 159.212

CAGE analysis