Hb_002188_100

Information

Type -
Description -
Location Contig2188: 106663-107604
Sequence    

Annotation

kegg
ID rcu:RCOM_1383120
description hypothetical protein
nr
ID XP_002522114.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S7Z8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1383120 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002188_100 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000463_050 0.1484321503 - - histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
3 Hb_024505_030 0.1820132524 - - PREDICTED: aspartate aminotransferase, chloroplastic [Jatropha curcas]
4 Hb_002153_010 0.1850545904 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
5 Hb_001922_040 0.190439476 - - reticulon family protein [Populus trichocarpa]
6 Hb_000329_530 0.1917429922 - - Uncharacterized protein TCM_038736 [Theobroma cacao]
7 Hb_162999_010 0.1951464997 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
8 Hb_004025_030 0.2007323152 - - -
9 Hb_000612_070 0.2122633479 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000048_090 0.2150325106 transcription factor TF Family: SET hypothetical protein JCGZ_06559 [Jatropha curcas]
11 Hb_077562_040 0.2285062187 - - hypothetical protein JCGZ_24573 [Jatropha curcas]
12 Hb_001488_110 0.2373194735 - - -
13 Hb_003376_170 0.2386700273 - - PREDICTED: uncharacterized protein LOC105642198 isoform X2 [Jatropha curcas]
14 Hb_126398_010 0.241169758 - - -
15 Hb_002639_070 0.2450502121 - - PREDICTED: uncharacterized protein LOC105635265 [Jatropha curcas]
16 Hb_000184_120 0.2471716147 - - hypothetical protein JCGZ_18526 [Jatropha curcas]
17 Hb_002081_100 0.2484605477 - - -
18 Hb_064201_010 0.2552620613 - - hypothetical protein RCOM_1685970 [Ricinus communis]
19 Hb_000340_480 0.2563200301 - - -
20 Hb_004375_060 0.2576063602 - - PREDICTED: myelin transcription factor 1-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002188_100 Hb_002188_100 Hb_000463_050 Hb_000463_050 Hb_002188_100--Hb_000463_050 Hb_024505_030 Hb_024505_030 Hb_002188_100--Hb_024505_030 Hb_002153_010 Hb_002153_010 Hb_002188_100--Hb_002153_010 Hb_001922_040 Hb_001922_040 Hb_002188_100--Hb_001922_040 Hb_000329_530 Hb_000329_530 Hb_002188_100--Hb_000329_530 Hb_162999_010 Hb_162999_010 Hb_002188_100--Hb_162999_010 Hb_000463_050--Hb_024505_030 Hb_000463_050--Hb_001922_040 Hb_002081_100 Hb_002081_100 Hb_000463_050--Hb_002081_100 Hb_000612_070 Hb_000612_070 Hb_000463_050--Hb_000612_070 Hb_004375_060 Hb_004375_060 Hb_000463_050--Hb_004375_060 Hb_024505_030--Hb_001922_040 Hb_024505_030--Hb_000612_070 Hb_064201_010 Hb_064201_010 Hb_024505_030--Hb_064201_010 Hb_000454_030 Hb_000454_030 Hb_024505_030--Hb_000454_030 Hb_174107_010 Hb_174107_010 Hb_002153_010--Hb_174107_010 Hb_002153_010--Hb_162999_010 Hb_001488_110 Hb_001488_110 Hb_002153_010--Hb_001488_110 Hb_077562_040 Hb_077562_040 Hb_002153_010--Hb_077562_040 Hb_000048_090 Hb_000048_090 Hb_002153_010--Hb_000048_090 Hb_001922_040--Hb_000612_070 Hb_001712_050 Hb_001712_050 Hb_001922_040--Hb_001712_050 Hb_000340_480 Hb_000340_480 Hb_001922_040--Hb_000340_480 Hb_001741_050 Hb_001741_050 Hb_000329_530--Hb_001741_050 Hb_002742_010 Hb_002742_010 Hb_000329_530--Hb_002742_010 Hb_004449_010 Hb_004449_010 Hb_000329_530--Hb_004449_010 Hb_188382_010 Hb_188382_010 Hb_000329_530--Hb_188382_010 Hb_000329_530--Hb_162999_010 Hb_162999_010--Hb_000048_090 Hb_126398_010 Hb_126398_010 Hb_162999_010--Hb_126398_010 Hb_162999_010--Hb_001488_110 Hb_162999_010--Hb_174107_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.245268 0 0 0 0.671955 1.11963
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.294173 0.539475 0 0 0

CAGE analysis