Hb_001922_040

Information

Type -
Description -
Location Contig1922: 35997-38930
Sequence    

Annotation

kegg
ID pop:POPTR_0001s10040g
description POPTRDRAFT_829457; reticulon family protein
nr
ID XP_002299504.1
description reticulon family protein [Populus trichocarpa]
swissprot
ID Q9SUR3
description Reticulon-like protein B1 OS=Arabidopsis thaliana GN=RTNLB1 PE=1 SV=1
trembl
ID A9PAK3
description Reticulon-like protein OS=Populus trichocarpa GN=POPTR_0001s10040g PE=2 SV=1
Gene Ontology
ID GO:0005789
description reticulon-like protein b1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001922_040 0.0 - - reticulon family protein [Populus trichocarpa]
2 Hb_000612_070 0.0901907373 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000463_050 0.1778904842 - - histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
4 Hb_024505_030 0.1783547968 - - PREDICTED: aspartate aminotransferase, chloroplastic [Jatropha curcas]
5 Hb_002188_100 0.190439476 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001712_050 0.1950639926 - - PREDICTED: uncharacterized protein LOC105641944 [Jatropha curcas]
7 Hb_000340_480 0.1964785614 - - -
8 Hb_004025_030 0.1964971908 - - -
9 Hb_004375_060 0.2009065832 - - PREDICTED: myelin transcription factor 1-like isoform X1 [Jatropha curcas]
10 Hb_001513_020 0.208718494 - - PREDICTED: methionine aminopeptidase 1A isoform X1 [Jatropha curcas]
11 Hb_002081_100 0.2150811634 - - -
12 Hb_000048_090 0.2299786945 transcription factor TF Family: SET hypothetical protein JCGZ_06559 [Jatropha curcas]
13 Hb_000061_410 0.2316667684 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
14 Hb_003376_170 0.2336111834 - - PREDICTED: uncharacterized protein LOC105642198 isoform X2 [Jatropha curcas]
15 Hb_001427_180 0.234038287 - - PREDICTED: F-box/LRR-repeat protein At4g29420 [Jatropha curcas]
16 Hb_064201_010 0.2355224304 - - hypothetical protein RCOM_1685970 [Ricinus communis]
17 Hb_003507_040 0.2429230431 - - hypothetical protein RCOM_1685970 [Ricinus communis]
18 Hb_001675_060 0.2458635539 - - PREDICTED: dynein light chain 1, cytoplasmic-like [Jatropha curcas]
19 Hb_027445_060 0.2469744207 - - PREDICTED: pescadillo homolog isoform X1 [Jatropha curcas]
20 Hb_077562_040 0.2477059578 - - hypothetical protein JCGZ_24573 [Jatropha curcas]

Gene co-expression network

sample Hb_001922_040 Hb_001922_040 Hb_000612_070 Hb_000612_070 Hb_001922_040--Hb_000612_070 Hb_000463_050 Hb_000463_050 Hb_001922_040--Hb_000463_050 Hb_024505_030 Hb_024505_030 Hb_001922_040--Hb_024505_030 Hb_002188_100 Hb_002188_100 Hb_001922_040--Hb_002188_100 Hb_001712_050 Hb_001712_050 Hb_001922_040--Hb_001712_050 Hb_000340_480 Hb_000340_480 Hb_001922_040--Hb_000340_480 Hb_000612_070--Hb_000340_480 Hb_004375_060 Hb_004375_060 Hb_000612_070--Hb_004375_060 Hb_002081_100 Hb_002081_100 Hb_000612_070--Hb_002081_100 Hb_004025_030 Hb_004025_030 Hb_000612_070--Hb_004025_030 Hb_003507_040 Hb_003507_040 Hb_000612_070--Hb_003507_040 Hb_000463_050--Hb_024505_030 Hb_000463_050--Hb_002188_100 Hb_000463_050--Hb_002081_100 Hb_000463_050--Hb_000612_070 Hb_000463_050--Hb_004375_060 Hb_024505_030--Hb_002188_100 Hb_024505_030--Hb_000612_070 Hb_064201_010 Hb_064201_010 Hb_024505_030--Hb_064201_010 Hb_000454_030 Hb_000454_030 Hb_024505_030--Hb_000454_030 Hb_002153_010 Hb_002153_010 Hb_002188_100--Hb_002153_010 Hb_000329_530 Hb_000329_530 Hb_002188_100--Hb_000329_530 Hb_162999_010 Hb_162999_010 Hb_002188_100--Hb_162999_010 Hb_001513_020 Hb_001513_020 Hb_001712_050--Hb_001513_020 Hb_005305_060 Hb_005305_060 Hb_001712_050--Hb_005305_060 Hb_002639_070 Hb_002639_070 Hb_001712_050--Hb_002639_070 Hb_071923_010 Hb_071923_010 Hb_001712_050--Hb_071923_010 Hb_001712_050--Hb_000612_070 Hb_000340_480--Hb_002081_100 Hb_000340_480--Hb_004375_060 Hb_005496_060 Hb_005496_060 Hb_000340_480--Hb_005496_060 Hb_004449_010 Hb_004449_010 Hb_000340_480--Hb_004449_010 Hb_002835_190 Hb_002835_190 Hb_000340_480--Hb_002835_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.95113 0 0.561036 0 8.73994 14.0068
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.27568 3.14255 0.658869 0 0

CAGE analysis