Hb_000340_480

Information

Type -
Description -
Location Contig340: 400000-404251
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35587: 403839-405816
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000340_480 0.0 - - -
2 Hb_002081_100 0.1130560724 - - -
3 Hb_004375_060 0.1265768096 - - PREDICTED: myelin transcription factor 1-like isoform X1 [Jatropha curcas]
4 Hb_000612_070 0.1270729369 - - conserved hypothetical protein [Ricinus communis]
5 Hb_005496_060 0.1431160663 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 38-like [Jatropha curcas]
6 Hb_004449_010 0.1497130572 - - lipase [Ricinus communis]
7 Hb_002835_190 0.1548423069 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
8 Hb_000329_620 0.1621808003 - - PREDICTED: uncharacterized protein LOC105643215 [Jatropha curcas]
9 Hb_178345_010 0.1624397125 - - hypothetical protein PHAVU_004G084200g [Phaseolus vulgaris]
10 Hb_004657_010 0.1642176263 - - PREDICTED: uncharacterized protein LOC105639764 [Jatropha curcas]
11 Hb_064201_010 0.1688334398 - - hypothetical protein RCOM_1685970 [Ricinus communis]
12 Hb_003507_040 0.1752795603 - - hypothetical protein RCOM_1685970 [Ricinus communis]
13 Hb_006557_010 0.1805628537 - - -
14 Hb_013479_020 0.1850410964 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
15 Hb_004852_020 0.1864458019 - - -
16 Hb_000172_610 0.1867317523 - - hypothetical protein POPTR_0017s02240g, partial [Populus trichocarpa]
17 Hb_001252_160 0.1884352311 - - PREDICTED: PRA1 family protein A3 [Jatropha curcas]
18 Hb_000061_410 0.1904058031 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
19 Hb_001504_170 0.1926252162 - - plant poly(A)+ RNA export protein, putative [Ricinus communis]
20 Hb_001922_040 0.1964785614 - - reticulon family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_000340_480 Hb_000340_480 Hb_002081_100 Hb_002081_100 Hb_000340_480--Hb_002081_100 Hb_004375_060 Hb_004375_060 Hb_000340_480--Hb_004375_060 Hb_000612_070 Hb_000612_070 Hb_000340_480--Hb_000612_070 Hb_005496_060 Hb_005496_060 Hb_000340_480--Hb_005496_060 Hb_004449_010 Hb_004449_010 Hb_000340_480--Hb_004449_010 Hb_002835_190 Hb_002835_190 Hb_000340_480--Hb_002835_190 Hb_002081_100--Hb_004375_060 Hb_064201_010 Hb_064201_010 Hb_002081_100--Hb_064201_010 Hb_000329_620 Hb_000329_620 Hb_002081_100--Hb_000329_620 Hb_178345_010 Hb_178345_010 Hb_002081_100--Hb_178345_010 Hb_000061_410 Hb_000061_410 Hb_002081_100--Hb_000061_410 Hb_004375_060--Hb_178345_010 Hb_001504_170 Hb_001504_170 Hb_004375_060--Hb_001504_170 Hb_013479_020 Hb_013479_020 Hb_004375_060--Hb_013479_020 Hb_004025_030 Hb_004025_030 Hb_004375_060--Hb_004025_030 Hb_001922_040 Hb_001922_040 Hb_000612_070--Hb_001922_040 Hb_000612_070--Hb_004375_060 Hb_000612_070--Hb_002081_100 Hb_000612_070--Hb_004025_030 Hb_003507_040 Hb_003507_040 Hb_000612_070--Hb_003507_040 Hb_005496_060--Hb_002835_190 Hb_006557_010 Hb_006557_010 Hb_005496_060--Hb_006557_010 Hb_004657_010 Hb_004657_010 Hb_005496_060--Hb_004657_010 Hb_002374_340 Hb_002374_340 Hb_005496_060--Hb_002374_340 Hb_000753_260 Hb_000753_260 Hb_005496_060--Hb_000753_260 Hb_004449_010--Hb_004657_010 Hb_004449_010--Hb_178345_010 Hb_000977_140 Hb_000977_140 Hb_004449_010--Hb_000977_140 Hb_004449_010--Hb_006557_010 Hb_012395_100 Hb_012395_100 Hb_004449_010--Hb_012395_100 Hb_003913_100 Hb_003913_100 Hb_002835_190--Hb_003913_100 Hb_001252_160 Hb_001252_160 Hb_002835_190--Hb_001252_160 Hb_002835_190--Hb_000329_620 Hb_002942_030 Hb_002942_030 Hb_002835_190--Hb_002942_030 Hb_002835_190--Hb_013479_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.50434 0 0.0829892 0 4.11316 4.54786
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.2207 1.0844 0.282335 0.236145 0

CAGE analysis