Hb_000463_050

Information

Type -
Description -
Location Contig463: 21169-21558
Sequence    

Annotation

kegg
ID rcu:RCOM_2009430
description histone-lysine n-methyltransferase, suvh, putative
nr
ID XP_002539868.1
description histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9TNP9
description Histone-lysine n-methyltransferase, suvh, putative OS=Ricinus communis GN=RCOM_2009430 PE=4 SV=1
Gene Ontology
ID GO:0016740
description histone-lysine n-methyltransferase family member suvh9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000463_050 0.0 - - histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
2 Hb_024505_030 0.1088464988 - - PREDICTED: aspartate aminotransferase, chloroplastic [Jatropha curcas]
3 Hb_002188_100 0.1484321503 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001922_040 0.1778904842 - - reticulon family protein [Populus trichocarpa]
5 Hb_002081_100 0.1953050278 - - -
6 Hb_000612_070 0.2049700022 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004375_060 0.2080482443 - - PREDICTED: myelin transcription factor 1-like isoform X1 [Jatropha curcas]
8 Hb_003376_170 0.217693789 - - PREDICTED: uncharacterized protein LOC105642198 isoform X2 [Jatropha curcas]
9 Hb_000454_030 0.226210642 - - -
10 Hb_064201_010 0.2277705624 - - hypothetical protein RCOM_1685970 [Ricinus communis]
11 Hb_002153_010 0.2285334384 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
12 Hb_000340_480 0.2299636111 - - -
13 Hb_000048_090 0.2350776004 transcription factor TF Family: SET hypothetical protein JCGZ_06559 [Jatropha curcas]
14 Hb_004025_030 0.2352001278 - - -
15 Hb_000329_530 0.2368464726 - - Uncharacterized protein TCM_038736 [Theobroma cacao]
16 Hb_001675_060 0.2447967671 - - PREDICTED: dynein light chain 1, cytoplasmic-like [Jatropha curcas]
17 Hb_005016_150 0.2538819569 - - -
18 Hb_178345_010 0.2560869856 - - hypothetical protein PHAVU_004G084200g [Phaseolus vulgaris]
19 Hb_086859_010 0.2567523868 - - -
20 Hb_077562_040 0.2570164526 - - hypothetical protein JCGZ_24573 [Jatropha curcas]

Gene co-expression network

sample Hb_000463_050 Hb_000463_050 Hb_024505_030 Hb_024505_030 Hb_000463_050--Hb_024505_030 Hb_002188_100 Hb_002188_100 Hb_000463_050--Hb_002188_100 Hb_001922_040 Hb_001922_040 Hb_000463_050--Hb_001922_040 Hb_002081_100 Hb_002081_100 Hb_000463_050--Hb_002081_100 Hb_000612_070 Hb_000612_070 Hb_000463_050--Hb_000612_070 Hb_004375_060 Hb_004375_060 Hb_000463_050--Hb_004375_060 Hb_024505_030--Hb_001922_040 Hb_024505_030--Hb_002188_100 Hb_024505_030--Hb_000612_070 Hb_064201_010 Hb_064201_010 Hb_024505_030--Hb_064201_010 Hb_000454_030 Hb_000454_030 Hb_024505_030--Hb_000454_030 Hb_002153_010 Hb_002153_010 Hb_002188_100--Hb_002153_010 Hb_002188_100--Hb_001922_040 Hb_000329_530 Hb_000329_530 Hb_002188_100--Hb_000329_530 Hb_162999_010 Hb_162999_010 Hb_002188_100--Hb_162999_010 Hb_001922_040--Hb_000612_070 Hb_001712_050 Hb_001712_050 Hb_001922_040--Hb_001712_050 Hb_000340_480 Hb_000340_480 Hb_001922_040--Hb_000340_480 Hb_002081_100--Hb_000340_480 Hb_002081_100--Hb_004375_060 Hb_002081_100--Hb_064201_010 Hb_000329_620 Hb_000329_620 Hb_002081_100--Hb_000329_620 Hb_178345_010 Hb_178345_010 Hb_002081_100--Hb_178345_010 Hb_000061_410 Hb_000061_410 Hb_002081_100--Hb_000061_410 Hb_000612_070--Hb_000340_480 Hb_000612_070--Hb_004375_060 Hb_000612_070--Hb_002081_100 Hb_004025_030 Hb_004025_030 Hb_000612_070--Hb_004025_030 Hb_003507_040 Hb_003507_040 Hb_000612_070--Hb_003507_040 Hb_004375_060--Hb_000340_480 Hb_004375_060--Hb_178345_010 Hb_001504_170 Hb_001504_170 Hb_004375_060--Hb_001504_170 Hb_013479_020 Hb_013479_020 Hb_004375_060--Hb_013479_020 Hb_004375_060--Hb_004025_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.644497 0 0.13908 0 1.30946 1.86609
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.41862 0.657659 0 0 0

CAGE analysis