Hb_000048_090

Information

Type transcription factor
Description TF Family: SET
Location Contig48: 165967-185777
Sequence    

Annotation

kegg
ID vvi:100265173
description histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4
nr
ID KDP46771.1
description hypothetical protein JCGZ_06559 [Jatropha curcas]
swissprot
ID Q8GZB6
description Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 OS=Arabidopsis thaliana GN=SUVH4 PE=1 SV=2
trembl
ID A0A067LE93
description Histone-lysine N-methyltransferase OS=Jatropha curcas GN=JCGZ_06559 PE=4 SV=1
Gene Ontology
ID GO:0005634
description histone-lysine n- h3 lysine-9 specific suvh4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000048_090 0.0 transcription factor TF Family: SET hypothetical protein JCGZ_06559 [Jatropha curcas]
2 Hb_162999_010 0.1415023113 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
3 Hb_004025_030 0.1895476299 - - -
4 Hb_004502_050 0.1903272708 - - hypothetical protein POPTR_1488s00200g [Populus trichocarpa]
5 Hb_000048_100 0.1981063636 - - conserved hypothetical protein [Ricinus communis]
6 Hb_126398_010 0.2011517208 - - -
7 Hb_002153_010 0.2030337874 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
8 Hb_002188_100 0.2150325106 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001488_110 0.2203443966 - - -
10 Hb_029982_010 0.221437981 - - hypothetical protein CICLE_v10006145mg [Citrus clementina]
11 Hb_188382_010 0.2274485614 - - Ran GTPase binding protein, putative [Ricinus communis]
12 Hb_000025_100 0.2292233977 - - -
13 Hb_001922_040 0.2299786945 - - reticulon family protein [Populus trichocarpa]
14 Hb_000612_070 0.2300362926 - - conserved hypothetical protein [Ricinus communis]
15 Hb_121550_010 0.2320816998 - - conserved hypothetical protein [Ricinus communis]
16 Hb_115919_010 0.2321101805 - - unknown [Lotus japonicus]
17 Hb_005305_060 0.2341987212 - - hypothetical protein MIMGU_mgv1a015111mg [Erythranthe guttata]
18 Hb_086859_010 0.2348444767 - - -
19 Hb_000463_050 0.2350776004 - - histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
20 Hb_136765_010 0.2374434161 - - PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000048_090 Hb_000048_090 Hb_162999_010 Hb_162999_010 Hb_000048_090--Hb_162999_010 Hb_004025_030 Hb_004025_030 Hb_000048_090--Hb_004025_030 Hb_004502_050 Hb_004502_050 Hb_000048_090--Hb_004502_050 Hb_000048_100 Hb_000048_100 Hb_000048_090--Hb_000048_100 Hb_126398_010 Hb_126398_010 Hb_000048_090--Hb_126398_010 Hb_002153_010 Hb_002153_010 Hb_000048_090--Hb_002153_010 Hb_162999_010--Hb_002153_010 Hb_162999_010--Hb_126398_010 Hb_001488_110 Hb_001488_110 Hb_162999_010--Hb_001488_110 Hb_174107_010 Hb_174107_010 Hb_162999_010--Hb_174107_010 Hb_002188_100 Hb_002188_100 Hb_162999_010--Hb_002188_100 Hb_077562_040 Hb_077562_040 Hb_004025_030--Hb_077562_040 Hb_000184_120 Hb_000184_120 Hb_004025_030--Hb_000184_120 Hb_023675_010 Hb_023675_010 Hb_004025_030--Hb_023675_010 Hb_000563_530 Hb_000563_530 Hb_004025_030--Hb_000563_530 Hb_004375_060 Hb_004375_060 Hb_004025_030--Hb_004375_060 Hb_027445_060 Hb_027445_060 Hb_004025_030--Hb_027445_060 Hb_028639_050 Hb_028639_050 Hb_004502_050--Hb_028639_050 Hb_011016_090 Hb_011016_090 Hb_004502_050--Hb_011016_090 Hb_005305_060 Hb_005305_060 Hb_004502_050--Hb_005305_060 Hb_003398_060 Hb_003398_060 Hb_004502_050--Hb_003398_060 Hb_004502_050--Hb_027445_060 Hb_004117_180 Hb_004117_180 Hb_004502_050--Hb_004117_180 Hb_030765_010 Hb_030765_010 Hb_000048_100--Hb_030765_010 Hb_004586_450 Hb_004586_450 Hb_000048_100--Hb_004586_450 Hb_000562_080 Hb_000562_080 Hb_000048_100--Hb_000562_080 Hb_007574_060 Hb_007574_060 Hb_000048_100--Hb_007574_060 Hb_056768_010 Hb_056768_010 Hb_000048_100--Hb_056768_010 Hb_000348_040 Hb_000348_040 Hb_000048_100--Hb_000348_040 Hb_001981_080 Hb_001981_080 Hb_126398_010--Hb_001981_080 Hb_003702_050 Hb_003702_050 Hb_126398_010--Hb_003702_050 Hb_135403_010 Hb_135403_010 Hb_126398_010--Hb_135403_010 Hb_126398_010--Hb_002153_010 Hb_002153_010--Hb_174107_010 Hb_002153_010--Hb_001488_110 Hb_002153_010--Hb_002188_100 Hb_002153_010--Hb_077562_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.250565 0 0.062177 0.0513241 0.340599 1.20592
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.611296 0.54369 0 0 0

CAGE analysis