Hb_056768_010

Information

Type -
Description -
Location Contig56768: 729-1880
Sequence    

Annotation

kegg
ID cam:101505069
description serine/threonine-protein kinase HT1-like
nr
ID XP_004489293.1
description PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Cicer arietinum]
swissprot
ID Q5UQG7
description Putative serine/threonine-protein kinase/receptor R818 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R818 PE=3 SV=1
trembl
ID A0A0D9Y045
description Uncharacterized protein OS=Leersia perrieri PE=4 SV=1
Gene Ontology
ID GO:0004672
description serine threonine-protein kinase ht1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_056768_010 0.0 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Cicer arietinum]
2 Hb_004586_450 0.1466865472 - - -
3 Hb_000048_100 0.1883039929 - - conserved hypothetical protein [Ricinus communis]
4 Hb_029982_010 0.2104647813 - - hypothetical protein CICLE_v10006145mg [Citrus clementina]
5 Hb_008667_050 0.2200065905 - - PREDICTED: serine/threonine-protein kinase HT1-like [Malus domestica]
6 Hb_078604_010 0.2238334705 - - -
7 Hb_005690_020 0.2244107919 - - hypothetical protein POPTR_0006s08200g [Populus trichocarpa]
8 Hb_000367_170 0.2283686915 - - PREDICTED: LYR motif-containing protein 4 [Jatropha curcas]
9 Hb_004502_080 0.2288112945 - - hypothetical protein JCGZ_23578 [Jatropha curcas]
10 Hb_000331_320 0.2301974975 - - -
11 Hb_001405_130 0.2302221661 - - PREDICTED: uncharacterized protein LOC102587892 [Solanum tuberosum]
12 Hb_000562_080 0.231848227 - - conserved hypothetical protein [Ricinus communis]
13 Hb_029888_020 0.2333413336 - - hypothetical protein PHAVU_007G268100g [Phaseolus vulgaris]
14 Hb_086859_010 0.2364814813 - - -
15 Hb_030765_010 0.2369795895 desease resistance Gene Name: ABC_tran PREDICTED: ABC transporter G family member 11-like isoform X1 [Solanum lycopersicum]
16 Hb_188382_010 0.2378471142 - - Ran GTPase binding protein, putative [Ricinus communis]
17 Hb_080147_090 0.2404078348 - - hypothetical protein JCGZ_07271 [Jatropha curcas]
18 Hb_007574_060 0.2407158346 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 27-like [Jatropha curcas]
19 Hb_006501_030 0.2411209275 - - hypothetical protein POPTR_0006s17720g [Populus trichocarpa]
20 Hb_048197_010 0.2415105196 - - -

Gene co-expression network

sample Hb_056768_010 Hb_056768_010 Hb_004586_450 Hb_004586_450 Hb_056768_010--Hb_004586_450 Hb_000048_100 Hb_000048_100 Hb_056768_010--Hb_000048_100 Hb_029982_010 Hb_029982_010 Hb_056768_010--Hb_029982_010 Hb_008667_050 Hb_008667_050 Hb_056768_010--Hb_008667_050 Hb_078604_010 Hb_078604_010 Hb_056768_010--Hb_078604_010 Hb_005690_020 Hb_005690_020 Hb_056768_010--Hb_005690_020 Hb_004586_450--Hb_000048_100 Hb_001057_050 Hb_001057_050 Hb_004586_450--Hb_001057_050 Hb_000562_080 Hb_000562_080 Hb_004586_450--Hb_000562_080 Hb_001047_140 Hb_001047_140 Hb_004586_450--Hb_001047_140 Hb_029888_020 Hb_029888_020 Hb_004586_450--Hb_029888_020 Hb_030765_010 Hb_030765_010 Hb_000048_100--Hb_030765_010 Hb_000048_100--Hb_000562_080 Hb_007574_060 Hb_007574_060 Hb_000048_100--Hb_007574_060 Hb_000348_040 Hb_000348_040 Hb_000048_100--Hb_000348_040 Hb_086859_010 Hb_086859_010 Hb_029982_010--Hb_086859_010 Hb_042404_010 Hb_042404_010 Hb_029982_010--Hb_042404_010 Hb_188382_010 Hb_188382_010 Hb_029982_010--Hb_188382_010 Hb_004048_010 Hb_004048_010 Hb_029982_010--Hb_004048_010 Hb_001405_130 Hb_001405_130 Hb_029982_010--Hb_001405_130 Hb_142522_010 Hb_142522_010 Hb_029982_010--Hb_142522_010 Hb_000331_320 Hb_000331_320 Hb_008667_050--Hb_000331_320 Hb_008667_050--Hb_001047_140 Hb_000453_210 Hb_000453_210 Hb_008667_050--Hb_000453_210 Hb_003209_030 Hb_003209_030 Hb_008667_050--Hb_003209_030 Hb_008667_050--Hb_005690_020 Hb_000529_240 Hb_000529_240 Hb_008667_050--Hb_000529_240 Hb_015401_010 Hb_015401_010 Hb_078604_010--Hb_015401_010 Hb_012532_030 Hb_012532_030 Hb_078604_010--Hb_012532_030 Hb_078604_010--Hb_086859_010 Hb_078604_010--Hb_029982_010 Hb_004502_080 Hb_004502_080 Hb_078604_010--Hb_004502_080 Hb_080147_090 Hb_080147_090 Hb_005690_020--Hb_080147_090 Hb_000331_310 Hb_000331_310 Hb_005690_020--Hb_000331_310 Hb_005690_020--Hb_000331_320 Hb_002821_010 Hb_002821_010 Hb_005690_020--Hb_002821_010 Hb_073973_110 Hb_073973_110 Hb_005690_020--Hb_073973_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.454264 0.646872 0.232384 0 1.21321 4.05715
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.10041 4.74678 0 0.293067 0

CAGE analysis