Hb_080147_090

Information

Type -
Description -
Location Contig80147: 58545-60585
Sequence    

Annotation

kegg
ID rcu:RCOM_1052050
description nitrate transporter, putative
nr
ID KDP33700.1
description hypothetical protein JCGZ_07271 [Jatropha curcas]
swissprot
ID Q9M817
description Protein NRT1/ PTR FAMILY 1.2 OS=Arabidopsis thaliana GN=NPF1.2 PE=1 SV=1
trembl
ID A0A067KN68
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07271 PE=4 SV=1
Gene Ontology
ID GO:0016021
description protein nrt1 ptr family -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_080147_090 0.0 - - hypothetical protein JCGZ_07271 [Jatropha curcas]
2 Hb_005690_020 0.1591158258 - - hypothetical protein POPTR_0006s08200g [Populus trichocarpa]
3 Hb_000243_010 0.1812795134 - - PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]
4 Hb_000003_350 0.1983752191 - - hypothetical protein POPTR_1155s00200g, partial [Populus trichocarpa]
5 Hb_048197_010 0.2038953441 - - -
6 Hb_005009_020 0.2042572405 - - -
7 Hb_075653_020 0.2045784024 - - -
8 Hb_000039_170 0.2101173927 - - protein MOTHER of FT and TF 1-like [Jatropha curcas]
9 Hb_000847_140 0.2112728507 - - -
10 Hb_004680_020 0.2123199503 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105789475 [Gossypium raimondii]
11 Hb_000175_400 0.2183619872 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001057_050 0.2191369147 - - hypothetical protein POPTR_0003s15960g, partial [Populus trichocarpa]
13 Hb_000995_050 0.2193302839 - - 40S ribosomal protein S17C [Hevea brasiliensis]
14 Hb_000184_050 0.2197650427 - - NOI, putative [Ricinus communis]
15 Hb_000331_320 0.2203108711 - - -
16 Hb_001629_100 0.2210474911 - - PREDICTED: uncharacterized protein LOC100252136 isoform X2 [Vitis vinifera]
17 Hb_000367_170 0.2218544973 - - PREDICTED: LYR motif-containing protein 4 [Jatropha curcas]
18 Hb_001950_120 0.2300040563 - - PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Jatropha curcas]
19 Hb_000347_510 0.2301556269 - - actin binding protein, putative [Ricinus communis]
20 Hb_004586_450 0.2317353276 - - -

Gene co-expression network

sample Hb_080147_090 Hb_080147_090 Hb_005690_020 Hb_005690_020 Hb_080147_090--Hb_005690_020 Hb_000243_010 Hb_000243_010 Hb_080147_090--Hb_000243_010 Hb_000003_350 Hb_000003_350 Hb_080147_090--Hb_000003_350 Hb_048197_010 Hb_048197_010 Hb_080147_090--Hb_048197_010 Hb_005009_020 Hb_005009_020 Hb_080147_090--Hb_005009_020 Hb_075653_020 Hb_075653_020 Hb_080147_090--Hb_075653_020 Hb_000331_310 Hb_000331_310 Hb_005690_020--Hb_000331_310 Hb_000331_320 Hb_000331_320 Hb_005690_020--Hb_000331_320 Hb_008667_050 Hb_008667_050 Hb_005690_020--Hb_008667_050 Hb_002821_010 Hb_002821_010 Hb_005690_020--Hb_002821_010 Hb_073973_110 Hb_073973_110 Hb_005690_020--Hb_073973_110 Hb_000175_400 Hb_000175_400 Hb_000243_010--Hb_000175_400 Hb_025193_050 Hb_025193_050 Hb_000243_010--Hb_025193_050 Hb_000152_430 Hb_000152_430 Hb_000243_010--Hb_000152_430 Hb_000243_010--Hb_000003_350 Hb_000608_420 Hb_000608_420 Hb_000243_010--Hb_000608_420 Hb_000318_380 Hb_000318_380 Hb_000243_010--Hb_000318_380 Hb_002259_150 Hb_002259_150 Hb_000003_350--Hb_002259_150 Hb_001629_100 Hb_001629_100 Hb_000003_350--Hb_001629_100 Hb_000003_350--Hb_000175_400 Hb_000193_350 Hb_000193_350 Hb_000003_350--Hb_000193_350 Hb_001057_050 Hb_001057_050 Hb_000003_350--Hb_001057_050 Hb_036369_010 Hb_036369_010 Hb_048197_010--Hb_036369_010 Hb_170305_020 Hb_170305_020 Hb_048197_010--Hb_170305_020 Hb_001248_020 Hb_001248_020 Hb_048197_010--Hb_001248_020 Hb_048197_010--Hb_002821_010 Hb_077562_040 Hb_077562_040 Hb_048197_010--Hb_077562_040 Hb_023675_010 Hb_023675_010 Hb_048197_010--Hb_023675_010 Hb_004680_020 Hb_004680_020 Hb_005009_020--Hb_004680_020 Hb_000847_140 Hb_000847_140 Hb_005009_020--Hb_000847_140 Hb_008699_040 Hb_008699_040 Hb_005009_020--Hb_008699_040 Hb_005009_020--Hb_075653_020 Hb_000395_060 Hb_000395_060 Hb_005009_020--Hb_000395_060 Hb_001623_430 Hb_001623_430 Hb_075653_020--Hb_001623_430 Hb_005539_210 Hb_005539_210 Hb_075653_020--Hb_005539_210 Hb_002471_160 Hb_002471_160 Hb_075653_020--Hb_002471_160 Hb_003680_070 Hb_003680_070 Hb_075653_020--Hb_003680_070 Hb_075653_020--Hb_008699_040 Hb_001723_080 Hb_001723_080 Hb_075653_020--Hb_001723_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0223212 0.0295246 0 0 0.0432554 0.155423
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.126921 0.17975 0.0377592 0.0556805 0

CAGE analysis