Hb_000562_080

Information

Type -
Description -
Location Contig562: 92072-92374
Sequence    

Annotation

kegg
ID rcu:RCOM_0855750
description hypothetical protein
nr
ID XP_002517504.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RUQ9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0855750 PE=4 SV=1
Gene Ontology
ID GO:0005840
description mitochondrial 39s ribosomal protein l53

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48868: 92840-98297
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000562_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001405_130 0.1520648361 - - PREDICTED: uncharacterized protein LOC102587892 [Solanum tuberosum]
3 Hb_004502_080 0.1789470453 - - hypothetical protein JCGZ_23578 [Jatropha curcas]
4 Hb_029888_020 0.1818802587 - - hypothetical protein PHAVU_007G268100g [Phaseolus vulgaris]
5 Hb_000048_100 0.18431499 - - conserved hypothetical protein [Ricinus communis]
6 Hb_188382_010 0.1854544663 - - Ran GTPase binding protein, putative [Ricinus communis]
7 Hb_008557_020 0.1988474259 - - PREDICTED: uncharacterized protein LOC105638665 [Jatropha curcas]
8 Hb_029982_010 0.2019101033 - - hypothetical protein CICLE_v10006145mg [Citrus clementina]
9 Hb_004586_450 0.2020026547 - - -
10 Hb_004048_010 0.2090762089 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Citrus sinensis]
11 Hb_008442_010 0.2101423547 - - PREDICTED: nudix hydrolase 16, mitochondrial-like [Citrus sinensis]
12 Hb_003023_040 0.2149275401 - - -
13 Hb_001057_050 0.2157449214 - - hypothetical protein POPTR_0003s15960g, partial [Populus trichocarpa]
14 Hb_030765_010 0.2201475294 desease resistance Gene Name: ABC_tran PREDICTED: ABC transporter G family member 11-like isoform X1 [Solanum lycopersicum]
15 Hb_000009_040 0.220346609 - - -
16 Hb_014834_140 0.2211796945 - - Uncharacterized protein TCM_015942 [Theobroma cacao]
17 Hb_004712_180 0.2241883348 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003405_060 0.2256196504 - - -
19 Hb_017711_010 0.2263063591 - - PREDICTED: mitochondrial import receptor subunit TOM9-2 [Jatropha curcas]
20 Hb_056768_010 0.231848227 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Cicer arietinum]

Gene co-expression network

sample Hb_000562_080 Hb_000562_080 Hb_001405_130 Hb_001405_130 Hb_000562_080--Hb_001405_130 Hb_004502_080 Hb_004502_080 Hb_000562_080--Hb_004502_080 Hb_029888_020 Hb_029888_020 Hb_000562_080--Hb_029888_020 Hb_000048_100 Hb_000048_100 Hb_000562_080--Hb_000048_100 Hb_188382_010 Hb_188382_010 Hb_000562_080--Hb_188382_010 Hb_008557_020 Hb_008557_020 Hb_000562_080--Hb_008557_020 Hb_013492_010 Hb_013492_010 Hb_001405_130--Hb_013492_010 Hb_004048_010 Hb_004048_010 Hb_001405_130--Hb_004048_010 Hb_008442_010 Hb_008442_010 Hb_001405_130--Hb_008442_010 Hb_005199_010 Hb_005199_010 Hb_001405_130--Hb_005199_010 Hb_003405_060 Hb_003405_060 Hb_001405_130--Hb_003405_060 Hb_000175_040 Hb_000175_040 Hb_004502_080--Hb_000175_040 Hb_004502_080--Hb_029888_020 Hb_003057_050 Hb_003057_050 Hb_004502_080--Hb_003057_050 Hb_003057_130 Hb_003057_130 Hb_004502_080--Hb_003057_130 Hb_019033_010 Hb_019033_010 Hb_004502_080--Hb_019033_010 Hb_025246_010 Hb_025246_010 Hb_004502_080--Hb_025246_010 Hb_086703_010 Hb_086703_010 Hb_029888_020--Hb_086703_010 Hb_004807_060 Hb_004807_060 Hb_029888_020--Hb_004807_060 Hb_003746_060 Hb_003746_060 Hb_029888_020--Hb_003746_060 Hb_000193_350 Hb_000193_350 Hb_029888_020--Hb_000193_350 Hb_017711_010 Hb_017711_010 Hb_029888_020--Hb_017711_010 Hb_030765_010 Hb_030765_010 Hb_000048_100--Hb_030765_010 Hb_004586_450 Hb_004586_450 Hb_000048_100--Hb_004586_450 Hb_007574_060 Hb_007574_060 Hb_000048_100--Hb_007574_060 Hb_056768_010 Hb_056768_010 Hb_000048_100--Hb_056768_010 Hb_000348_040 Hb_000348_040 Hb_000048_100--Hb_000348_040 Hb_015675_060 Hb_015675_060 Hb_188382_010--Hb_015675_060 Hb_039548_010 Hb_039548_010 Hb_188382_010--Hb_039548_010 Hb_188382_010--Hb_030765_010 Hb_002742_010 Hb_002742_010 Hb_188382_010--Hb_002742_010 Hb_029982_010 Hb_029982_010 Hb_188382_010--Hb_029982_010 Hb_001279_250 Hb_001279_250 Hb_008557_020--Hb_001279_250 Hb_001621_180 Hb_001621_180 Hb_008557_020--Hb_001621_180 Hb_001266_050 Hb_001266_050 Hb_008557_020--Hb_001266_050 Hb_150299_030 Hb_150299_030 Hb_008557_020--Hb_150299_030 Hb_001252_140 Hb_001252_140 Hb_008557_020--Hb_001252_140 Hb_000052_010 Hb_000052_010 Hb_008557_020--Hb_000052_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.03502 0.14311 0.396182 0.878758 1.80596 4.88687
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.30133 6.03741 0.410953 0 0

CAGE analysis