Hb_015401_010

Information

Type -
Description -
Location Contig15401: 5263-16094
Sequence    

Annotation

kegg
ID fve:101311209
description uncharacterized protein LOC101311209
nr
ID CAN76398.1
description hypothetical protein VITISV_001548 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5B3P7
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001548 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015401_010 0.0 - - hypothetical protein VITISV_001548 [Vitis vinifera]
2 Hb_078604_010 0.170982814 - - -
3 Hb_012532_030 0.209996698 - - -
4 Hb_001405_130 0.2430492718 - - PREDICTED: uncharacterized protein LOC102587892 [Solanum tuberosum]
5 Hb_056768_010 0.2435438119 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Cicer arietinum]
6 Hb_000348_040 0.2454231349 - - -
7 Hb_007574_060 0.2465615371 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 27-like [Jatropha curcas]
8 Hb_000562_080 0.2488917725 - - conserved hypothetical protein [Ricinus communis]
9 Hb_188382_010 0.2550120544 - - Ran GTPase binding protein, putative [Ricinus communis]
10 Hb_022500_010 0.258224797 - - -
11 Hb_007765_120 0.2610016677 - - glycogen phosphorylase, putative [Ricinus communis]
12 Hb_005199_010 0.2615352563 - - conserved hypothetical protein [Ricinus communis]
13 Hb_029982_010 0.2658317272 - - hypothetical protein CICLE_v10006145mg [Citrus clementina]
14 Hb_000048_100 0.2665437696 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004048_010 0.2681090123 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Citrus sinensis]
16 Hb_030765_010 0.2684614241 desease resistance Gene Name: ABC_tran PREDICTED: ABC transporter G family member 11-like isoform X1 [Solanum lycopersicum]
17 Hb_004502_080 0.2693365158 - - hypothetical protein JCGZ_23578 [Jatropha curcas]
18 Hb_000275_010 0.2707188496 - - -
19 Hb_004116_110 0.2756814708 - - hypothetical protein MTR_3g064100 [Medicago truncatula]
20 Hb_145890_010 0.2756937621 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_015401_010 Hb_015401_010 Hb_078604_010 Hb_078604_010 Hb_015401_010--Hb_078604_010 Hb_012532_030 Hb_012532_030 Hb_015401_010--Hb_012532_030 Hb_001405_130 Hb_001405_130 Hb_015401_010--Hb_001405_130 Hb_056768_010 Hb_056768_010 Hb_015401_010--Hb_056768_010 Hb_000348_040 Hb_000348_040 Hb_015401_010--Hb_000348_040 Hb_007574_060 Hb_007574_060 Hb_015401_010--Hb_007574_060 Hb_078604_010--Hb_012532_030 Hb_086859_010 Hb_086859_010 Hb_078604_010--Hb_086859_010 Hb_078604_010--Hb_056768_010 Hb_029982_010 Hb_029982_010 Hb_078604_010--Hb_029982_010 Hb_004502_080 Hb_004502_080 Hb_078604_010--Hb_004502_080 Hb_008442_010 Hb_008442_010 Hb_012532_030--Hb_008442_010 Hb_004374_180 Hb_004374_180 Hb_012532_030--Hb_004374_180 Hb_012532_030--Hb_001405_130 Hb_013492_010 Hb_013492_010 Hb_012532_030--Hb_013492_010 Hb_000562_080 Hb_000562_080 Hb_001405_130--Hb_000562_080 Hb_001405_130--Hb_013492_010 Hb_004048_010 Hb_004048_010 Hb_001405_130--Hb_004048_010 Hb_001405_130--Hb_008442_010 Hb_005199_010 Hb_005199_010 Hb_001405_130--Hb_005199_010 Hb_003405_060 Hb_003405_060 Hb_001405_130--Hb_003405_060 Hb_004586_450 Hb_004586_450 Hb_056768_010--Hb_004586_450 Hb_000048_100 Hb_000048_100 Hb_056768_010--Hb_000048_100 Hb_056768_010--Hb_029982_010 Hb_008667_050 Hb_008667_050 Hb_056768_010--Hb_008667_050 Hb_005690_020 Hb_005690_020 Hb_056768_010--Hb_005690_020 Hb_006501_030 Hb_006501_030 Hb_000348_040--Hb_006501_030 Hb_004297_030 Hb_004297_030 Hb_000348_040--Hb_004297_030 Hb_015091_010 Hb_015091_010 Hb_000348_040--Hb_015091_010 Hb_063511_010 Hb_063511_010 Hb_000348_040--Hb_063511_010 Hb_088496_010 Hb_088496_010 Hb_000348_040--Hb_088496_010 Hb_000348_040--Hb_000048_100 Hb_163413_010 Hb_163413_010 Hb_007574_060--Hb_163413_010 Hb_007574_060--Hb_000048_100 Hb_007574_060--Hb_001405_130 Hb_000832_240 Hb_000832_240 Hb_007574_060--Hb_000832_240 Hb_007574_060--Hb_008442_010 Hb_007574_060--Hb_000348_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0319297 0 0.049637 0 0.0299578 0.120193
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.147178 0.23143 0 0 0

CAGE analysis