Hb_088496_010

Information

Type -
Description -
Location Contig88496: 64-919
Sequence    

Annotation

kegg
ID bvg:104889111
description uncharacterized LOC104889111
nr
ID XP_010672557.1
description PREDICTED: uncharacterized protein LOC104889111 [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID E2DN01
description Putative uncharacterized protein OS=Beta vulgaris PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_088496_010 0.0 - - PREDICTED: uncharacterized protein LOC104889111 [Beta vulgaris subsp. vulgaris]
2 Hb_004297_030 0.0299304673 - - PREDICTED: uncharacterized protein LOC105633198 [Jatropha curcas]
3 Hb_000003_770 0.1115587935 - - -
4 Hb_094721_010 0.1443248352 - - PREDICTED: uncharacterized protein LOC104809818, partial [Tarenaya hassleriana]
5 Hb_001379_130 0.1447807486 - - PREDICTED: pre-mRNA-processing protein 40A isoform X2 [Jatropha curcas]
6 Hb_012324_020 0.1456081677 - - -
7 Hb_001257_020 0.1736150515 - - -
8 Hb_015091_010 0.1843360402 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
9 Hb_000348_040 0.1857647465 - - -
10 Hb_007761_050 0.1998004801 - - calcineurin-like protein [Hevea brasiliensis]
11 Hb_063511_010 0.2272893498 - - DNA-directed RNA polymerase II subunit RPB4 [Gossypium arboreum]
12 Hb_006501_030 0.2307836831 - - hypothetical protein POPTR_0006s17720g [Populus trichocarpa]
13 Hb_030765_010 0.2314146138 desease resistance Gene Name: ABC_tran PREDICTED: ABC transporter G family member 11-like isoform X1 [Solanum lycopersicum]
14 Hb_175572_010 0.2359361991 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
15 Hb_145890_010 0.236261041 - - unnamed protein product [Vitis vinifera]
16 Hb_005408_040 0.2376746178 - - -
17 Hb_003116_020 0.2493039535 - - PREDICTED: uncharacterized protein LOC105793230 [Gossypium raimondii]
18 Hb_148262_020 0.2497070389 - - -
19 Hb_000738_010 0.2500118965 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
20 Hb_000107_640 0.2502478632 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_088496_010 Hb_088496_010 Hb_004297_030 Hb_004297_030 Hb_088496_010--Hb_004297_030 Hb_000003_770 Hb_000003_770 Hb_088496_010--Hb_000003_770 Hb_094721_010 Hb_094721_010 Hb_088496_010--Hb_094721_010 Hb_001379_130 Hb_001379_130 Hb_088496_010--Hb_001379_130 Hb_012324_020 Hb_012324_020 Hb_088496_010--Hb_012324_020 Hb_001257_020 Hb_001257_020 Hb_088496_010--Hb_001257_020 Hb_004297_030--Hb_000003_770 Hb_015091_010 Hb_015091_010 Hb_004297_030--Hb_015091_010 Hb_004297_030--Hb_094721_010 Hb_004297_030--Hb_012324_020 Hb_000348_040 Hb_000348_040 Hb_004297_030--Hb_000348_040 Hb_000003_770--Hb_001379_130 Hb_000003_770--Hb_001257_020 Hb_000003_770--Hb_012324_020 Hb_000003_770--Hb_094721_010 Hb_094721_010--Hb_012324_020 Hb_094721_010--Hb_001379_130 Hb_005408_040 Hb_005408_040 Hb_094721_010--Hb_005408_040 Hb_001379_130--Hb_001257_020 Hb_001379_130--Hb_012324_020 Hb_001379_130--Hb_004297_030 Hb_012324_020--Hb_005408_040 Hb_007761_050 Hb_007761_050 Hb_001257_020--Hb_007761_050 Hb_148262_020 Hb_148262_020 Hb_001257_020--Hb_148262_020 Hb_001257_020--Hb_004297_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.0345096
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0660619 0.0519455 0 0 0

CAGE analysis