Hb_174107_010

Information

Type -
Description -
Location Contig174107: 4514-10540
Sequence    

Annotation

kegg
ID pop:POPTR_0001s43820g
description hypothetical protein
nr
ID XP_012453298.1
description PREDICTED: uncharacterized protein LOC105775323 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_174107_010 0.0 - - PREDICTED: uncharacterized protein LOC105775323 [Gossypium raimondii]
2 Hb_002153_010 0.1221682008 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
3 Hb_162999_010 0.1896036107 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
4 Hb_004116_110 0.1945713482 - - hypothetical protein MTR_3g064100 [Medicago truncatula]
5 Hb_001488_110 0.2121485937 - - -
6 Hb_036285_010 0.2155246283 - - -
7 Hb_001095_060 0.2251133687 - - Uncharacterized protein TCM_012505 [Theobroma cacao]
8 Hb_021888_110 0.2257494583 - - -
9 Hb_077562_040 0.2270447592 - - hypothetical protein JCGZ_24573 [Jatropha curcas]
10 Hb_002205_200 0.2270611334 - - PREDICTED: uncharacterized protein LOC105649174 [Jatropha curcas]
11 Hb_048197_010 0.2290911892 - - -
12 Hb_068946_010 0.2363802007 - - hypothetical protein CICLE_v100122621mg, partial [Citrus clementina]
13 Hb_004098_030 0.2366147944 - - TMV resistance protein N, putative [Ricinus communis]
14 Hb_000563_530 0.2408352551 - - PREDICTED: uncharacterized protein LOC105643453 [Jatropha curcas]
15 Hb_004968_060 0.2412519065 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000048_090 0.2422835291 transcription factor TF Family: SET hypothetical protein JCGZ_06559 [Jatropha curcas]
17 Hb_015675_060 0.2443681235 - - -
18 Hb_010588_010 0.2454440881 - - -
19 Hb_004025_030 0.2511506109 - - -
20 Hb_004060_010 0.2596057184 - - -

Gene co-expression network

sample Hb_174107_010 Hb_174107_010 Hb_002153_010 Hb_002153_010 Hb_174107_010--Hb_002153_010 Hb_162999_010 Hb_162999_010 Hb_174107_010--Hb_162999_010 Hb_004116_110 Hb_004116_110 Hb_174107_010--Hb_004116_110 Hb_001488_110 Hb_001488_110 Hb_174107_010--Hb_001488_110 Hb_036285_010 Hb_036285_010 Hb_174107_010--Hb_036285_010 Hb_001095_060 Hb_001095_060 Hb_174107_010--Hb_001095_060 Hb_002153_010--Hb_162999_010 Hb_002153_010--Hb_001488_110 Hb_002188_100 Hb_002188_100 Hb_002153_010--Hb_002188_100 Hb_077562_040 Hb_077562_040 Hb_002153_010--Hb_077562_040 Hb_000048_090 Hb_000048_090 Hb_002153_010--Hb_000048_090 Hb_162999_010--Hb_000048_090 Hb_126398_010 Hb_126398_010 Hb_162999_010--Hb_126398_010 Hb_162999_010--Hb_001488_110 Hb_162999_010--Hb_002188_100 Hb_004691_040 Hb_004691_040 Hb_004116_110--Hb_004691_040 Hb_015675_060 Hb_015675_060 Hb_004116_110--Hb_015675_060 Hb_048197_010 Hb_048197_010 Hb_004116_110--Hb_048197_010 Hb_188382_010 Hb_188382_010 Hb_004116_110--Hb_188382_010 Hb_002742_010 Hb_002742_010 Hb_004116_110--Hb_002742_010 Hb_001488_110--Hb_077562_040 Hb_027445_060 Hb_027445_060 Hb_001488_110--Hb_027445_060 Hb_000184_120 Hb_000184_120 Hb_001488_110--Hb_000184_120 Hb_068946_010 Hb_068946_010 Hb_001488_110--Hb_068946_010 Hb_004025_030 Hb_004025_030 Hb_001488_110--Hb_004025_030 Hb_000563_530 Hb_000563_530 Hb_001488_110--Hb_000563_530 Hb_002205_200 Hb_002205_200 Hb_036285_010--Hb_002205_200 Hb_010588_010 Hb_010588_010 Hb_036285_010--Hb_010588_010 Hb_166548_010 Hb_166548_010 Hb_036285_010--Hb_166548_010 Hb_001981_080 Hb_001981_080 Hb_036285_010--Hb_001981_080 Hb_021888_110 Hb_021888_110 Hb_036285_010--Hb_021888_110 Hb_121236_010 Hb_121236_010 Hb_001095_060--Hb_121236_010 Hb_115919_010 Hb_115919_010 Hb_001095_060--Hb_115919_010 Hb_001095_060--Hb_027445_060 Hb_001095_060--Hb_068946_010 Hb_061581_010 Hb_061581_010 Hb_001095_060--Hb_061581_010 Hb_001095_060--Hb_001488_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.105042 0 0 0 0.0315103 0.194717
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0767773 0.120793 0 0.0120869 0

CAGE analysis