Hb_003992_110

Information

Type -
Description -
Location Contig3992: 74426-74911
Sequence    

Annotation

kegg
ID cit:102627687
description uncharacterized LOC102627687
nr
ID CAN77450.1
description hypothetical protein VITISV_016971 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5C0G0
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016971 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003992_110 0.0 - - hypothetical protein VITISV_016971 [Vitis vinifera]
2 Hb_001369_260 0.2157668561 - - aldo-keto reductase, putative [Ricinus communis]
3 Hb_145890_010 0.2255521596 - - unnamed protein product [Vitis vinifera]
4 Hb_000189_360 0.2317273104 - - Calcium-transporting ATPase 12, plasma membrane-type [Morus notabilis]
5 Hb_002741_030 0.2343537485 - - -
6 Hb_000179_150 0.2355989002 - - hypothetical protein ZEAMMB73_153699 [Zea mays]
7 Hb_007451_060 0.2368977566 - - BAHD family acyltransferase, clade V, putative [Theobroma cacao]
8 Hb_109578_010 0.2393506087 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000736_010 0.2530006483 - - PREDICTED: uncharacterized protein LOC105762083 [Gossypium raimondii]
10 Hb_000184_190 0.2604566742 - - hypothetical protein VITISV_016970 [Vitis vinifera]
11 Hb_008667_050 0.2735391479 - - PREDICTED: serine/threonine-protein kinase HT1-like [Malus domestica]
12 Hb_001186_050 0.2760128318 - - -
13 Hb_084889_010 0.2760628049 - - PREDICTED: uncharacterized protein LOC105638918 [Jatropha curcas]
14 Hb_001143_010 0.278774453 - - -
15 Hb_009139_010 0.2840515571 - - putative Phospholipid-Diacylglycerol acyltransferase [Elaeis guineensis]
16 Hb_020247_060 0.2870062946 - - UDP-glucoronosyl/UDP-glucosyl transferase family protein [Populus trichocarpa]
17 Hb_000373_300 0.2870554712 - - hypothetical protein F775_20382 [Aegilops tauschii]
18 Hb_005222_020 0.2887449561 - - hypothetical protein [Beta vulgaris subsp. vulgaris]
19 Hb_000275_010 0.294244188 - - -
20 Hb_114839_010 0.2950809201 - - -

Gene co-expression network

sample Hb_003992_110 Hb_003992_110 Hb_001369_260 Hb_001369_260 Hb_003992_110--Hb_001369_260 Hb_145890_010 Hb_145890_010 Hb_003992_110--Hb_145890_010 Hb_000189_360 Hb_000189_360 Hb_003992_110--Hb_000189_360 Hb_002741_030 Hb_002741_030 Hb_003992_110--Hb_002741_030 Hb_000179_150 Hb_000179_150 Hb_003992_110--Hb_000179_150 Hb_007451_060 Hb_007451_060 Hb_003992_110--Hb_007451_060 Hb_092449_010 Hb_092449_010 Hb_001369_260--Hb_092449_010 Hb_012324_020 Hb_012324_020 Hb_001369_260--Hb_012324_020 Hb_094721_010 Hb_094721_010 Hb_001369_260--Hb_094721_010 Hb_020247_060 Hb_020247_060 Hb_001369_260--Hb_020247_060 Hb_003158_020 Hb_003158_020 Hb_001369_260--Hb_003158_020 Hb_145890_010--Hb_002741_030 Hb_145890_010--Hb_012324_020 Hb_145890_010--Hb_094721_010 Hb_001186_050 Hb_001186_050 Hb_145890_010--Hb_001186_050 Hb_005222_020 Hb_005222_020 Hb_145890_010--Hb_005222_020 Hb_000184_190 Hb_000184_190 Hb_145890_010--Hb_000184_190 Hb_114839_010 Hb_114839_010 Hb_000189_360--Hb_114839_010 Hb_000189_360--Hb_007451_060 Hb_009139_010 Hb_009139_010 Hb_000189_360--Hb_009139_010 Hb_000713_020 Hb_000713_020 Hb_000189_360--Hb_000713_020 Hb_000189_360--Hb_000179_150 Hb_002741_030--Hb_001186_050 Hb_010588_010 Hb_010588_010 Hb_002741_030--Hb_010588_010 Hb_000373_300 Hb_000373_300 Hb_002741_030--Hb_000373_300 Hb_000275_010 Hb_000275_010 Hb_002741_030--Hb_000275_010 Hb_030765_010 Hb_030765_010 Hb_002741_030--Hb_030765_010 Hb_084889_010 Hb_084889_010 Hb_000179_150--Hb_084889_010 Hb_133311_010 Hb_133311_010 Hb_000179_150--Hb_133311_010 Hb_109578_010 Hb_109578_010 Hb_000179_150--Hb_109578_010 Hb_000179_150--Hb_009139_010 Hb_000179_150--Hb_000713_020 Hb_001495_060 Hb_001495_060 Hb_000179_150--Hb_001495_060 Hb_170207_010 Hb_170207_010 Hb_007451_060--Hb_170207_010 Hb_141383_010 Hb_141383_010 Hb_007451_060--Hb_141383_010 Hb_000529_240 Hb_000529_240 Hb_007451_060--Hb_000529_240 Hb_000829_080 Hb_000829_080 Hb_007451_060--Hb_000829_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.12 0.124733 0 0 0 0.116801
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.422036 0.663077 0 0 0

CAGE analysis