Hb_001186_050

Information

Type -
Description -
Location Contig1186: 45148-46094
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05508: 43501-44686
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001186_050 0.0 - - -
2 Hb_002741_030 0.0850426956 - - -
3 Hb_010588_010 0.1800001948 - - -
4 Hb_145890_010 0.1837459263 - - unnamed protein product [Vitis vinifera]
5 Hb_030765_010 0.200572867 desease resistance Gene Name: ABC_tran PREDICTED: ABC transporter G family member 11-like isoform X1 [Solanum lycopersicum]
6 Hb_000275_010 0.2223260556 - - -
7 Hb_000373_300 0.2236898393 - - hypothetical protein F775_20382 [Aegilops tauschii]
8 Hb_001141_400 0.2259383861 - - hypothetical protein B456_007G2854002, partial [Gossypium raimondii]
9 Hb_005222_020 0.2453417183 - - hypothetical protein [Beta vulgaris subsp. vulgaris]
10 Hb_000922_180 0.2570811095 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO5 [Jatropha curcas]
11 Hb_010128_110 0.2590374505 - - PREDICTED: uncharacterized protein LOC105632071 [Jatropha curcas]
12 Hb_000736_010 0.2595333549 - - PREDICTED: uncharacterized protein LOC105762083 [Gossypium raimondii]
13 Hb_002233_110 0.2610556627 - - PREDICTED: nuclear transcription factor Y subunit B-3-like [Jatropha curcas]
14 Hb_188382_010 0.2693457183 - - Ran GTPase binding protein, putative [Ricinus communis]
15 Hb_006502_040 0.2710602663 transcription factor TF Family: bHLH Transcription factor ICE1, putative [Ricinus communis]
16 Hb_006922_040 0.2711547047 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
17 Hb_002205_200 0.2750507454 - - PREDICTED: uncharacterized protein LOC105649174 [Jatropha curcas]
18 Hb_003992_110 0.2760128318 - - hypothetical protein VITISV_016971 [Vitis vinifera]
19 Hb_004116_110 0.2771962617 - - hypothetical protein MTR_3g064100 [Medicago truncatula]
20 Hb_109578_010 0.2805105383 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001186_050 Hb_001186_050 Hb_002741_030 Hb_002741_030 Hb_001186_050--Hb_002741_030 Hb_010588_010 Hb_010588_010 Hb_001186_050--Hb_010588_010 Hb_145890_010 Hb_145890_010 Hb_001186_050--Hb_145890_010 Hb_030765_010 Hb_030765_010 Hb_001186_050--Hb_030765_010 Hb_000275_010 Hb_000275_010 Hb_001186_050--Hb_000275_010 Hb_000373_300 Hb_000373_300 Hb_001186_050--Hb_000373_300 Hb_002741_030--Hb_145890_010 Hb_002741_030--Hb_010588_010 Hb_002741_030--Hb_000373_300 Hb_002741_030--Hb_000275_010 Hb_002741_030--Hb_030765_010 Hb_036285_010 Hb_036285_010 Hb_010588_010--Hb_036285_010 Hb_168418_010 Hb_168418_010 Hb_010588_010--Hb_168418_010 Hb_002205_200 Hb_002205_200 Hb_010588_010--Hb_002205_200 Hb_174107_010 Hb_174107_010 Hb_010588_010--Hb_174107_010 Hb_012324_020 Hb_012324_020 Hb_145890_010--Hb_012324_020 Hb_094721_010 Hb_094721_010 Hb_145890_010--Hb_094721_010 Hb_005222_020 Hb_005222_020 Hb_145890_010--Hb_005222_020 Hb_000184_190 Hb_000184_190 Hb_145890_010--Hb_000184_190 Hb_000048_100 Hb_000048_100 Hb_030765_010--Hb_000048_100 Hb_188382_010 Hb_188382_010 Hb_030765_010--Hb_188382_010 Hb_000086_330 Hb_000086_330 Hb_030765_010--Hb_000086_330 Hb_000348_040 Hb_000348_040 Hb_030765_010--Hb_000348_040 Hb_000736_010 Hb_000736_010 Hb_030765_010--Hb_000736_010 Hb_005199_010 Hb_005199_010 Hb_000275_010--Hb_005199_010 Hb_109578_010 Hb_109578_010 Hb_000275_010--Hb_109578_010 Hb_000275_010--Hb_005222_020 Hb_000275_010--Hb_145890_010 Hb_001141_400 Hb_001141_400 Hb_000373_300--Hb_001141_400 Hb_002742_010 Hb_002742_010 Hb_000373_300--Hb_002742_010 Hb_000861_050 Hb_000861_050 Hb_000373_300--Hb_000861_050 Hb_001143_010 Hb_001143_010 Hb_000373_300--Hb_001143_010 Hb_159085_010 Hb_159085_010 Hb_000373_300--Hb_159085_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0810476 0 0 0 0 0.0737177
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.191899 0.150729 0 0 0

CAGE analysis