Hb_145890_010

Information

Type -
Description -
Location Contig145890: 120-642
Sequence    

Annotation

kegg
ID vvi:104880164
description protein NRT1/ PTR FAMILY 5.7-like
nr
ID CBI30414.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q8RX67
description Protein NRT1/ PTR FAMILY 5.11 OS=Arabidopsis thaliana GN=NPF5.11 PE=2 SV=1
trembl
ID F6HKT4
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g02020 PE=4 SV=1
Gene Ontology
ID GO:0016020
description protein nrt1 ptr family -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_145890_010 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_002741_030 0.1187214773 - - -
3 Hb_012324_020 0.1832895959 - - -
4 Hb_094721_010 0.1835330236 - - PREDICTED: uncharacterized protein LOC104809818, partial [Tarenaya hassleriana]
5 Hb_001186_050 0.1837459263 - - -
6 Hb_005222_020 0.2088203533 - - hypothetical protein [Beta vulgaris subsp. vulgaris]
7 Hb_000184_190 0.2095132675 - - hypothetical protein VITISV_016970 [Vitis vinifera]
8 Hb_000275_010 0.2130007042 - - -
9 Hb_030765_010 0.2209752057 desease resistance Gene Name: ABC_tran PREDICTED: ABC transporter G family member 11-like isoform X1 [Solanum lycopersicum]
10 Hb_003992_110 0.2255521596 - - hypothetical protein VITISV_016971 [Vitis vinifera]
11 Hb_000003_770 0.228434366 - - -
12 Hb_001379_130 0.2360272921 - - PREDICTED: pre-mRNA-processing protein 40A isoform X2 [Jatropha curcas]
13 Hb_088496_010 0.236261041 - - PREDICTED: uncharacterized protein LOC104889111 [Beta vulgaris subsp. vulgaris]
14 Hb_000736_010 0.2391450676 - - PREDICTED: uncharacterized protein LOC105762083 [Gossypium raimondii]
15 Hb_000373_300 0.2411636789 - - hypothetical protein F775_20382 [Aegilops tauschii]
16 Hb_004297_030 0.2465939244 - - PREDICTED: uncharacterized protein LOC105633198 [Jatropha curcas]
17 Hb_010588_010 0.247913924 - - -
18 Hb_020247_060 0.2479423689 - - UDP-glucoronosyl/UDP-glucosyl transferase family protein [Populus trichocarpa]
19 Hb_005408_040 0.2481451453 - - -
20 Hb_005199_010 0.2489323501 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_145890_010 Hb_145890_010 Hb_002741_030 Hb_002741_030 Hb_145890_010--Hb_002741_030 Hb_012324_020 Hb_012324_020 Hb_145890_010--Hb_012324_020 Hb_094721_010 Hb_094721_010 Hb_145890_010--Hb_094721_010 Hb_001186_050 Hb_001186_050 Hb_145890_010--Hb_001186_050 Hb_005222_020 Hb_005222_020 Hb_145890_010--Hb_005222_020 Hb_000184_190 Hb_000184_190 Hb_145890_010--Hb_000184_190 Hb_002741_030--Hb_001186_050 Hb_010588_010 Hb_010588_010 Hb_002741_030--Hb_010588_010 Hb_000373_300 Hb_000373_300 Hb_002741_030--Hb_000373_300 Hb_000275_010 Hb_000275_010 Hb_002741_030--Hb_000275_010 Hb_030765_010 Hb_030765_010 Hb_002741_030--Hb_030765_010 Hb_012324_020--Hb_094721_010 Hb_000003_770 Hb_000003_770 Hb_012324_020--Hb_000003_770 Hb_088496_010 Hb_088496_010 Hb_012324_020--Hb_088496_010 Hb_001379_130 Hb_001379_130 Hb_012324_020--Hb_001379_130 Hb_004297_030 Hb_004297_030 Hb_012324_020--Hb_004297_030 Hb_005408_040 Hb_005408_040 Hb_012324_020--Hb_005408_040 Hb_094721_010--Hb_000003_770 Hb_094721_010--Hb_088496_010 Hb_094721_010--Hb_004297_030 Hb_094721_010--Hb_001379_130 Hb_094721_010--Hb_005408_040 Hb_001186_050--Hb_010588_010 Hb_001186_050--Hb_030765_010 Hb_001186_050--Hb_000275_010 Hb_001186_050--Hb_000373_300 Hb_001865_110 Hb_001865_110 Hb_005222_020--Hb_001865_110 Hb_005222_020--Hb_000275_010 Hb_005222_020--Hb_001379_130 Hb_005222_020--Hb_000003_770 Hb_000501_020 Hb_000501_020 Hb_005222_020--Hb_000501_020 Hb_000736_010 Hb_000736_010 Hb_005222_020--Hb_000736_010 Hb_003837_020 Hb_003837_020 Hb_000184_190--Hb_003837_020 Hb_002228_090 Hb_002228_090 Hb_000184_190--Hb_002228_090 Hb_031284_050 Hb_031284_050 Hb_000184_190--Hb_031284_050 Hb_002392_050 Hb_002392_050 Hb_000184_190--Hb_002392_050 Hb_000869_110 Hb_000869_110 Hb_000184_190--Hb_000869_110 Hb_039112_010 Hb_039112_010 Hb_000184_190--Hb_039112_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0676593 0 0 0 0 0.149932
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.318541 0.500418 0 0 0

CAGE analysis