Hb_000179_150

Information

Type -
Description -
Location Contig179: 146635-148107
Sequence    

Annotation

kegg
ID mtr:MTR_6g045280
description Lecithine cholesterol acyltransferase-like protein
nr
ID AFW80887.1
description hypothetical protein ZEAMMB73_153699 [Zea mays]
swissprot
ID -
description -
trembl
ID A0A0A9L331
description Uncharacterized protein OS=Arundo donax PE=4 SV=1
Gene Ontology
ID GO:0008374
description phospholipid:diacylglycerol acyltransferase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000179_150 0.0 - - hypothetical protein ZEAMMB73_153699 [Zea mays]
2 Hb_084889_010 0.1828923514 - - PREDICTED: uncharacterized protein LOC105638918 [Jatropha curcas]
3 Hb_133311_010 0.1949867658 - - PREDICTED: U-box domain-containing protein 62-like isoform X1 [Glycine max]
4 Hb_109578_010 0.201182715 - - conserved hypothetical protein [Ricinus communis]
5 Hb_009139_010 0.2207444126 - - putative Phospholipid-Diacylglycerol acyltransferase [Elaeis guineensis]
6 Hb_000713_020 0.2230403535 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
7 Hb_001495_060 0.2242601827 - - PREDICTED: probable aldo-keto reductase 1 [Jatropha curcas]
8 Hb_000453_210 0.2245069566 - - hypothetical protein PHAVU_006G019800g [Phaseolus vulgaris]
9 Hb_011242_030 0.2261059472 - - -
10 Hb_003992_110 0.2355989002 - - hypothetical protein VITISV_016971 [Vitis vinifera]
11 Hb_001143_010 0.2447527888 - - -
12 Hb_032974_010 0.2462218292 - - -
13 Hb_008667_050 0.2532181582 - - PREDICTED: serine/threonine-protein kinase HT1-like [Malus domestica]
14 Hb_005199_010 0.2581393485 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001047_140 0.2590799784 - - -
16 Hb_000122_040 0.2610029523 - - PREDICTED: uncharacterized protein LOC105649224 [Jatropha curcas]
17 Hb_000189_360 0.2617002748 - - Calcium-transporting ATPase 12, plasma membrane-type [Morus notabilis]
18 Hb_078604_010 0.2638606907 - - -
19 Hb_000529_240 0.2655504247 - - -
20 Hb_004102_030 0.2686360233 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]

Gene co-expression network

sample Hb_000179_150 Hb_000179_150 Hb_084889_010 Hb_084889_010 Hb_000179_150--Hb_084889_010 Hb_133311_010 Hb_133311_010 Hb_000179_150--Hb_133311_010 Hb_109578_010 Hb_109578_010 Hb_000179_150--Hb_109578_010 Hb_009139_010 Hb_009139_010 Hb_000179_150--Hb_009139_010 Hb_000713_020 Hb_000713_020 Hb_000179_150--Hb_000713_020 Hb_001495_060 Hb_001495_060 Hb_000179_150--Hb_001495_060 Hb_084889_010--Hb_109578_010 Hb_032974_010 Hb_032974_010 Hb_084889_010--Hb_032974_010 Hb_004102_030 Hb_004102_030 Hb_084889_010--Hb_004102_030 Hb_000975_270 Hb_000975_270 Hb_084889_010--Hb_000975_270 Hb_001017_080 Hb_001017_080 Hb_084889_010--Hb_001017_080 Hb_012135_010 Hb_012135_010 Hb_133311_010--Hb_012135_010 Hb_008667_040 Hb_008667_040 Hb_133311_010--Hb_008667_040 Hb_007333_010 Hb_007333_010 Hb_133311_010--Hb_007333_010 Hb_002045_140 Hb_002045_140 Hb_133311_010--Hb_002045_140 Hb_000264_290 Hb_000264_290 Hb_133311_010--Hb_000264_290 Hb_005199_010 Hb_005199_010 Hb_109578_010--Hb_005199_010 Hb_000275_010 Hb_000275_010 Hb_109578_010--Hb_000275_010 Hb_004048_010 Hb_004048_010 Hb_109578_010--Hb_004048_010 Hb_109578_010--Hb_001017_080 Hb_008667_050 Hb_008667_050 Hb_009139_010--Hb_008667_050 Hb_001047_140 Hb_001047_140 Hb_009139_010--Hb_001047_140 Hb_000189_360 Hb_000189_360 Hb_009139_010--Hb_000189_360 Hb_000529_240 Hb_000529_240 Hb_009139_010--Hb_000529_240 Hb_009139_010--Hb_001495_060 Hb_000713_020--Hb_000189_360 Hb_000713_020--Hb_133311_010 Hb_000713_020--Hb_084889_010 Hb_011242_030 Hb_011242_030 Hb_000713_020--Hb_011242_030 Hb_114839_010 Hb_114839_010 Hb_000713_020--Hb_114839_010 Hb_000453_210 Hb_000453_210 Hb_001495_060--Hb_000453_210 Hb_001495_060--Hb_000529_240 Hb_002685_180 Hb_002685_180 Hb_001495_060--Hb_002685_180 Hb_003209_030 Hb_003209_030 Hb_001495_060--Hb_003209_030 Hb_001143_010 Hb_001143_010 Hb_001495_060--Hb_001143_010 Hb_001495_060--Hb_001047_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.580383 0.925871 0.286064 0.196261 0.134057 0.537737
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.76115 2.48131 0 0.0418192 0

CAGE analysis