Hb_004102_030

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig4102: 2330-6136
Sequence    

Annotation

kegg
ID rcu:RCOM_0898870
description Disease resistance protein RFL1, putative (EC:3.1.3.16)
nr
ID XP_012073448.1
description PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
swissprot
ID Q8RXS5
description Probable disease resistance protein At5g63020 OS=Arabidopsis thaliana GN=At5g63020 PE=2 SV=2
trembl
ID A0A067KLL6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06192 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40524: 5162-5402
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004102_030 0.0 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
2 Hb_009976_010 0.2241386068 - - PREDICTED: uncharacterized protein LOC105630216 [Jatropha curcas]
3 Hb_000612_040 0.2290711155 - - hypothetical protein OsJ_16945 [Oryza sativa Japonica Group]
4 Hb_084889_010 0.2317810234 - - PREDICTED: uncharacterized protein LOC105638918 [Jatropha curcas]
5 Hb_032974_010 0.2415562281 - - -
6 Hb_000275_130 0.2420364905 - - hypothetical protein CICLE_v10003066mg [Citrus clementina]
7 Hb_148891_010 0.2428773793 - - -
8 Hb_001799_110 0.2508862382 - - PREDICTED: glycine--tRNA ligase 2, chloroplastic/mitochondrial isoform X2 [Jatropha curcas]
9 Hb_001832_150 0.2569602536 - - PREDICTED: uncharacterized protein LOC105637882 [Jatropha curcas]
10 Hb_012008_010 0.2572385061 - - -
11 Hb_001529_070 0.2582186522 transcription factor TF Family: AP2 hypothetical protein POPTR_0018s09900g [Populus trichocarpa]
12 Hb_001017_080 0.2606760442 - - hypothetical protein POPTR_0010s06020g [Populus trichocarpa]
13 Hb_033594_070 0.2608039882 - - PREDICTED: uncharacterized protein LOC105787685 isoform X1 [Gossypium raimondii]
14 Hb_011242_030 0.2619322661 - - -
15 Hb_182005_010 0.266308685 - - PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]
16 Hb_000809_060 0.267946085 transcription factor TF Family: LOB LOB domain-containing 36 -like protein [Gossypium arboreum]
17 Hb_000179_150 0.2686360233 - - hypothetical protein ZEAMMB73_153699 [Zea mays]
18 Hb_003362_080 0.268715502 - - beta-galactosidase, putative [Ricinus communis]
19 Hb_002631_300 0.2697484811 - - PREDICTED: uncharacterized protein LOC105646181 [Jatropha curcas]
20 Hb_005144_070 0.2700897814 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004102_030 Hb_004102_030 Hb_009976_010 Hb_009976_010 Hb_004102_030--Hb_009976_010 Hb_000612_040 Hb_000612_040 Hb_004102_030--Hb_000612_040 Hb_084889_010 Hb_084889_010 Hb_004102_030--Hb_084889_010 Hb_032974_010 Hb_032974_010 Hb_004102_030--Hb_032974_010 Hb_000275_130 Hb_000275_130 Hb_004102_030--Hb_000275_130 Hb_148891_010 Hb_148891_010 Hb_004102_030--Hb_148891_010 Hb_000743_030 Hb_000743_030 Hb_009976_010--Hb_000743_030 Hb_001799_110 Hb_001799_110 Hb_009976_010--Hb_001799_110 Hb_001862_120 Hb_001862_120 Hb_009976_010--Hb_001862_120 Hb_009557_030 Hb_009557_030 Hb_009976_010--Hb_009557_030 Hb_002631_300 Hb_002631_300 Hb_009976_010--Hb_002631_300 Hb_002092_120 Hb_002092_120 Hb_009976_010--Hb_002092_120 Hb_150930_010 Hb_150930_010 Hb_000612_040--Hb_150930_010 Hb_007553_020 Hb_007553_020 Hb_000612_040--Hb_007553_020 Hb_005144_070 Hb_005144_070 Hb_000612_040--Hb_005144_070 Hb_001449_010 Hb_001449_010 Hb_000612_040--Hb_001449_010 Hb_000923_090 Hb_000923_090 Hb_000612_040--Hb_000923_090 Hb_004871_020 Hb_004871_020 Hb_000612_040--Hb_004871_020 Hb_000179_150 Hb_000179_150 Hb_084889_010--Hb_000179_150 Hb_109578_010 Hb_109578_010 Hb_084889_010--Hb_109578_010 Hb_084889_010--Hb_032974_010 Hb_000975_270 Hb_000975_270 Hb_084889_010--Hb_000975_270 Hb_001017_080 Hb_001017_080 Hb_084889_010--Hb_001017_080 Hb_032974_010--Hb_000975_270 Hb_005714_050 Hb_005714_050 Hb_032974_010--Hb_005714_050 Hb_069022_010 Hb_069022_010 Hb_032974_010--Hb_069022_010 Hb_032974_010--Hb_001017_080 Hb_000111_230 Hb_000111_230 Hb_032974_010--Hb_000111_230 Hb_023732_060 Hb_023732_060 Hb_000275_130--Hb_023732_060 Hb_054074_010 Hb_054074_010 Hb_000275_130--Hb_054074_010 Hb_004421_020 Hb_004421_020 Hb_000275_130--Hb_004421_020 Hb_008699_020 Hb_008699_020 Hb_000275_130--Hb_008699_020 Hb_000096_130 Hb_000096_130 Hb_000275_130--Hb_000096_130 Hb_023386_010 Hb_023386_010 Hb_000275_130--Hb_023386_010 Hb_000445_190 Hb_000445_190 Hb_148891_010--Hb_000445_190 Hb_148891_010--Hb_001017_080 Hb_004931_010 Hb_004931_010 Hb_148891_010--Hb_004931_010 Hb_000803_040 Hb_000803_040 Hb_148891_010--Hb_000803_040 Hb_001495_060 Hb_001495_060 Hb_148891_010--Hb_001495_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.621613 0.842151 0.964259 1.01385 0.0545588 0.0798799
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.15781 2.11403 0.0708543 0.15698 0.105358

CAGE analysis