Hb_000612_040

Information

Type -
Description -
Location Contig612: 34398-38080
Sequence    

Annotation

kegg
ID bdi:100822220
description LOB domain-containing protein 1-like
nr
ID EEE62158.1
description hypothetical protein OsJ_16945 [Oryza sativa Japonica Group]
swissprot
ID Q9SK08
description LOB domain-containing protein 11 OS=Arabidopsis thaliana GN=LBD11 PE=2 SV=2
trembl
ID A0A0E0DLC2
description Uncharacterized protein OS=Oryza meridionalis PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000612_040 0.0 - - hypothetical protein OsJ_16945 [Oryza sativa Japonica Group]
2 Hb_150930_010 0.1355862502 - - conserved hypothetical protein [Ricinus communis]
3 Hb_007553_020 0.185747534 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005144_070 0.1968811667 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001449_010 0.1999866159 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000923_090 0.2097348824 - - -
7 Hb_004871_020 0.2139845546 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Jatropha curcas]
8 Hb_000317_070 0.214962577 - - PREDICTED: uncharacterized protein LOC103942205 isoform X2 [Pyrus x bretschneideri]
9 Hb_126861_010 0.2171872569 - - hypothetical protein M569_05914, partial [Genlisea aurea]
10 Hb_000390_140 0.2182379087 - - PREDICTED: putative gamma-glutamylcyclotransferase At3g02910 [Jatropha curcas]
11 Hb_000742_280 0.2194964352 - - ATP binding protein, putative [Ricinus communis]
12 Hb_171900_060 0.2196992868 - - PREDICTED: uncharacterized protein LOC105643368 [Jatropha curcas]
13 Hb_077354_010 0.2237577263 - - PREDICTED: uncharacterized protein LOC105637567 [Jatropha curcas]
14 Hb_004800_060 0.2251521261 - - PREDICTED: uncharacterized protein LOC105643856 [Jatropha curcas]
15 Hb_000356_090 0.2252147165 - - PREDICTED: uncharacterized protein At2g38710 [Jatropha curcas]
16 Hb_002609_160 0.2257208444 - - PREDICTED: GDP-mannose transporter GONST2 [Jatropha curcas]
17 Hb_075265_010 0.2272116887 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
18 Hb_000275_130 0.2281612281 - - hypothetical protein CICLE_v10003066mg [Citrus clementina]
19 Hb_000451_060 0.2281714696 - - hypothetical protein CICLE_v10010074mg [Citrus clementina]
20 Hb_010560_030 0.2285569292 - - PREDICTED: mitochondrial pyruvate carrier 4-like [Jatropha curcas]

Gene co-expression network

sample Hb_000612_040 Hb_000612_040 Hb_150930_010 Hb_150930_010 Hb_000612_040--Hb_150930_010 Hb_007553_020 Hb_007553_020 Hb_000612_040--Hb_007553_020 Hb_005144_070 Hb_005144_070 Hb_000612_040--Hb_005144_070 Hb_001449_010 Hb_001449_010 Hb_000612_040--Hb_001449_010 Hb_000923_090 Hb_000923_090 Hb_000612_040--Hb_000923_090 Hb_004871_020 Hb_004871_020 Hb_000612_040--Hb_004871_020 Hb_002609_160 Hb_002609_160 Hb_150930_010--Hb_002609_160 Hb_000317_070 Hb_000317_070 Hb_150930_010--Hb_000317_070 Hb_000356_090 Hb_000356_090 Hb_150930_010--Hb_000356_090 Hb_010560_030 Hb_010560_030 Hb_150930_010--Hb_010560_030 Hb_000087_130 Hb_000087_130 Hb_150930_010--Hb_000087_130 Hb_171900_060 Hb_171900_060 Hb_007553_020--Hb_171900_060 Hb_012340_050 Hb_012340_050 Hb_007553_020--Hb_012340_050 Hb_001234_070 Hb_001234_070 Hb_007553_020--Hb_001234_070 Hb_003582_070 Hb_003582_070 Hb_007553_020--Hb_003582_070 Hb_001863_130 Hb_001863_130 Hb_007553_020--Hb_001863_130 Hb_007553_020--Hb_010560_030 Hb_000809_060 Hb_000809_060 Hb_005144_070--Hb_000809_060 Hb_007313_080 Hb_007313_080 Hb_005144_070--Hb_007313_080 Hb_000768_130 Hb_000768_130 Hb_005144_070--Hb_000768_130 Hb_002081_030 Hb_002081_030 Hb_005144_070--Hb_002081_030 Hb_000454_180 Hb_000454_180 Hb_005144_070--Hb_000454_180 Hb_000742_280 Hb_000742_280 Hb_005144_070--Hb_000742_280 Hb_000331_430 Hb_000331_430 Hb_001449_010--Hb_000331_430 Hb_002811_290 Hb_002811_290 Hb_001449_010--Hb_002811_290 Hb_001449_010--Hb_001234_070 Hb_048898_010 Hb_048898_010 Hb_001449_010--Hb_048898_010 Hb_003362_030 Hb_003362_030 Hb_001449_010--Hb_003362_030 Hb_001449_010--Hb_171900_060 Hb_000390_140 Hb_000390_140 Hb_000923_090--Hb_000390_140 Hb_004162_210 Hb_004162_210 Hb_000923_090--Hb_004162_210 Hb_008695_050 Hb_008695_050 Hb_000923_090--Hb_008695_050 Hb_004800_060 Hb_004800_060 Hb_000923_090--Hb_004800_060 Hb_000923_090--Hb_002609_160 Hb_007894_060 Hb_007894_060 Hb_000923_090--Hb_007894_060 Hb_004871_020--Hb_000317_070 Hb_153544_010 Hb_153544_010 Hb_004871_020--Hb_153544_010 Hb_007441_300 Hb_007441_300 Hb_004871_020--Hb_007441_300 Hb_000525_020 Hb_000525_020 Hb_004871_020--Hb_000525_020 Hb_009711_020 Hb_009711_020 Hb_004871_020--Hb_009711_020 Hb_000030_290 Hb_000030_290 Hb_004871_020--Hb_000030_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.4606 5.18472 7.94139 10.0396 0.360865 1.16528
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.0685 25.7776 2.93904 6.38151 1.6935

CAGE analysis