Hb_150930_010

Information

Type -
Description -
Location Contig150930: 2390-3186
Sequence    

Annotation

kegg
ID rcu:RCOM_1031050
description hypothetical protein
nr
ID XP_002513763.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q6NPT8
description F-box protein PP2-B1 OS=Arabidopsis thaliana GN=PP2B1 PE=1 SV=1
trembl
ID B9RJ44
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1031050 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12730: 2483-3276
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_150930_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000612_040 0.1355862502 - - hypothetical protein OsJ_16945 [Oryza sativa Japonica Group]
3 Hb_002609_160 0.135778178 - - PREDICTED: GDP-mannose transporter GONST2 [Jatropha curcas]
4 Hb_000317_070 0.1446689456 - - PREDICTED: uncharacterized protein LOC103942205 isoform X2 [Pyrus x bretschneideri]
5 Hb_000356_090 0.1497926258 - - PREDICTED: uncharacterized protein At2g38710 [Jatropha curcas]
6 Hb_010560_030 0.1503539436 - - PREDICTED: mitochondrial pyruvate carrier 4-like [Jatropha curcas]
7 Hb_000087_130 0.1532130477 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial [Jatropha curcas]
8 Hb_004102_070 0.1543495111 - - Cytochrome c oxidase subunit 5b-2, mitochondrial -like protein [Gossypium arboreum]
9 Hb_004871_020 0.1570421518 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Jatropha curcas]
10 Hb_000742_280 0.1571632492 - - ATP binding protein, putative [Ricinus communis]
11 Hb_018124_010 0.164295794 - - PREDICTED: mitochondrial uncoupling protein 1 isoform X2 [Jatropha curcas]
12 Hb_001053_140 0.1646984395 - - PREDICTED: ATP synthase subunit O, mitochondrial [Jatropha curcas]
13 Hb_000450_130 0.1659643356 - - PREDICTED: uncharacterized protein LOC105630216 [Jatropha curcas]
14 Hb_000923_090 0.1669520984 - - -
15 Hb_000390_140 0.1695511639 - - PREDICTED: putative gamma-glutamylcyclotransferase At3g02910 [Jatropha curcas]
16 Hb_000525_020 0.1699859093 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_002234_070 0.170192109 - - PREDICTED: polynucleotide 5'-hydroxyl-kinase nol9 isoform X1 [Jatropha curcas]
18 Hb_000189_240 0.1703840225 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
19 Hb_000815_060 0.170864724 - - PREDICTED: uncharacterized protein LOC105630460 [Jatropha curcas]
20 Hb_024074_010 0.1715111581 - - PREDICTED: cytochrome c [Jatropha curcas]

Gene co-expression network

sample Hb_150930_010 Hb_150930_010 Hb_000612_040 Hb_000612_040 Hb_150930_010--Hb_000612_040 Hb_002609_160 Hb_002609_160 Hb_150930_010--Hb_002609_160 Hb_000317_070 Hb_000317_070 Hb_150930_010--Hb_000317_070 Hb_000356_090 Hb_000356_090 Hb_150930_010--Hb_000356_090 Hb_010560_030 Hb_010560_030 Hb_150930_010--Hb_010560_030 Hb_000087_130 Hb_000087_130 Hb_150930_010--Hb_000087_130 Hb_007553_020 Hb_007553_020 Hb_000612_040--Hb_007553_020 Hb_005144_070 Hb_005144_070 Hb_000612_040--Hb_005144_070 Hb_001449_010 Hb_001449_010 Hb_000612_040--Hb_001449_010 Hb_000923_090 Hb_000923_090 Hb_000612_040--Hb_000923_090 Hb_004871_020 Hb_004871_020 Hb_000612_040--Hb_004871_020 Hb_002609_160--Hb_000923_090 Hb_000030_200 Hb_000030_200 Hb_002609_160--Hb_000030_200 Hb_006915_040 Hb_006915_040 Hb_002609_160--Hb_006915_040 Hb_005307_050 Hb_005307_050 Hb_002609_160--Hb_005307_050 Hb_002609_160--Hb_000087_130 Hb_000317_070--Hb_004871_020 Hb_007441_300 Hb_007441_300 Hb_000317_070--Hb_007441_300 Hb_174865_010 Hb_174865_010 Hb_000317_070--Hb_174865_010 Hb_000735_040 Hb_000735_040 Hb_000317_070--Hb_000735_040 Hb_000093_110 Hb_000093_110 Hb_000317_070--Hb_000093_110 Hb_153544_010 Hb_153544_010 Hb_000317_070--Hb_153544_010 Hb_000356_090--Hb_000087_130 Hb_005391_030 Hb_005391_030 Hb_000356_090--Hb_005391_030 Hb_000356_090--Hb_006915_040 Hb_000189_240 Hb_000189_240 Hb_000356_090--Hb_000189_240 Hb_000258_250 Hb_000258_250 Hb_000356_090--Hb_000258_250 Hb_000356_090--Hb_000317_070 Hb_001053_140 Hb_001053_140 Hb_010560_030--Hb_001053_140 Hb_000327_380 Hb_000327_380 Hb_010560_030--Hb_000327_380 Hb_010560_030--Hb_000189_240 Hb_000302_140 Hb_000302_140 Hb_010560_030--Hb_000302_140 Hb_002303_060 Hb_002303_060 Hb_010560_030--Hb_002303_060 Hb_010560_030--Hb_000087_130 Hb_001155_040 Hb_001155_040 Hb_000087_130--Hb_001155_040 Hb_072922_020 Hb_072922_020 Hb_000087_130--Hb_072922_020 Hb_000087_130--Hb_006915_040 Hb_000948_220 Hb_000948_220 Hb_000087_130--Hb_000948_220 Hb_000087_130--Hb_000030_200 Hb_000384_120 Hb_000384_120 Hb_000087_130--Hb_000384_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.471 7.64641 14.3123 26.6456 2.67319 4.34024
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
40.1683 58.844 17.9369 20.2398 10.4753

CAGE analysis