Hb_069022_010

Information

Type -
Description -
Location Contig69022: 1-2353
Sequence    

Annotation

kegg
ID rcu:RCOM_0481360
description hypothetical protein
nr
ID XP_002530932.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SY63
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0481360 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_069022_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000445_190 0.1704826692 - - -
3 Hb_005714_050 0.186592541 transcription factor TF Family: B3 hypothetical protein POPTR_1461s00200g [Populus trichocarpa]
4 Hb_032974_010 0.1954430828 - - -
5 Hb_000099_230 0.2176299345 - - PREDICTED: F-box protein SKIP19-like [Gossypium raimondii]
6 Hb_000975_270 0.218629421 - - PREDICTED: histone H2B.11-like [Phoenix dactylifera]
7 Hb_000111_230 0.2221208087 - - -
8 Hb_000025_440 0.2393543703 - - PREDICTED: ankyrin repeat-containing protein P16F5.05c-like [Populus euphratica]
9 Hb_156503_040 0.2402584871 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
10 Hb_001017_080 0.2504555978 - - hypothetical protein POPTR_0010s06020g [Populus trichocarpa]
11 Hb_004048_010 0.2548696222 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Citrus sinensis]
12 Hb_123763_010 0.2582323003 - - PREDICTED: sarcoplasmic reticulum histidine-rich calcium-binding protein [Jatropha curcas]
13 Hb_000275_040 0.2698703518 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
14 Hb_148891_010 0.2716221699 - - -
15 Hb_000224_200 0.2717151548 - - PREDICTED: uncharacterized protein LOC105640874 [Jatropha curcas]
16 Hb_007885_010 0.2864383281 - - 60S ribosomal protein L24-1 isoform 1 [Theobroma cacao]
17 Hb_000500_210 0.2893797973 - - -
18 Hb_000179_150 0.2895543292 - - hypothetical protein ZEAMMB73_153699 [Zea mays]
19 Hb_084889_010 0.2916267539 - - PREDICTED: uncharacterized protein LOC105638918 [Jatropha curcas]
20 Hb_182005_010 0.2944361182 - - PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]

Gene co-expression network

sample Hb_069022_010 Hb_069022_010 Hb_000445_190 Hb_000445_190 Hb_069022_010--Hb_000445_190 Hb_005714_050 Hb_005714_050 Hb_069022_010--Hb_005714_050 Hb_032974_010 Hb_032974_010 Hb_069022_010--Hb_032974_010 Hb_000099_230 Hb_000099_230 Hb_069022_010--Hb_000099_230 Hb_000975_270 Hb_000975_270 Hb_069022_010--Hb_000975_270 Hb_000111_230 Hb_000111_230 Hb_069022_010--Hb_000111_230 Hb_148891_010 Hb_148891_010 Hb_000445_190--Hb_148891_010 Hb_000445_190--Hb_000099_230 Hb_001017_080 Hb_001017_080 Hb_000445_190--Hb_001017_080 Hb_000445_190--Hb_005714_050 Hb_000445_190--Hb_032974_010 Hb_005714_050--Hb_032974_010 Hb_005714_050--Hb_000975_270 Hb_005714_050--Hb_000111_230 Hb_000025_440 Hb_000025_440 Hb_005714_050--Hb_000025_440 Hb_156503_040 Hb_156503_040 Hb_005714_050--Hb_156503_040 Hb_032974_010--Hb_000975_270 Hb_084889_010 Hb_084889_010 Hb_032974_010--Hb_084889_010 Hb_032974_010--Hb_001017_080 Hb_032974_010--Hb_000111_230 Hb_127008_010 Hb_127008_010 Hb_000099_230--Hb_127008_010 Hb_014783_010 Hb_014783_010 Hb_000099_230--Hb_014783_010 Hb_003371_180 Hb_003371_180 Hb_000099_230--Hb_003371_180 Hb_008667_040 Hb_008667_040 Hb_000099_230--Hb_008667_040 Hb_186158_010 Hb_186158_010 Hb_000975_270--Hb_186158_010 Hb_011224_040 Hb_011224_040 Hb_000975_270--Hb_011224_040 Hb_000046_200 Hb_000046_200 Hb_000975_270--Hb_000046_200 Hb_004241_010 Hb_004241_010 Hb_000111_230--Hb_004241_010 Hb_000414_150 Hb_000414_150 Hb_000111_230--Hb_000414_150 Hb_002157_090 Hb_002157_090 Hb_000111_230--Hb_002157_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.86675 2.82557 1.77955 5.23117 5.06851 0.49034
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.932 20.9973 0 0 0

CAGE analysis