Hb_127008_010

Information

Type -
Description -
Location Contig127008: 519-1067
Sequence    

Annotation

kegg
ID rcu:RCOM_0517110
description hypothetical protein
nr
ID XP_012066499.1
description PREDICTED: uncharacterized protein LOC105629501 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9SRX9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0517110 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_127008_010 0.0 - - PREDICTED: uncharacterized protein LOC105629501 [Jatropha curcas]
2 Hb_001504_050 0.1608052486 - - hypothetical protein POPTR_0001s14840g [Populus trichocarpa]
3 Hb_000144_080 0.1659655594 - - PREDICTED: uncharacterized protein LOC104609774 [Nelumbo nucifera]
4 Hb_009486_150 0.1731909018 - - 60S ribosomal protein L37a-2 [Medicago truncatula]
5 Hb_027760_010 0.181815737 - - PREDICTED: uncharacterized protein LOC105630460 [Jatropha curcas]
6 Hb_001377_400 0.1822280299 - - neutral/alkaline invertase [Manihot esculenta]
7 Hb_003371_180 0.183424377 - - -
8 Hb_003058_080 0.1868135747 - - Chaperonin 10 isoform 1 [Theobroma cacao]
9 Hb_028347_010 0.1905029364 - - -
10 Hb_001545_040 0.193864996 - - PREDICTED: ras-related protein Rab7-like [Malus domestica]
11 Hb_000297_230 0.1961874695 - - PREDICTED: probable small nuclear ribonucleoprotein G [Populus euphratica]
12 Hb_011004_080 0.1989015658 - - PREDICTED: 60S ribosomal protein L37-3-like [Cucumis sativus]
13 Hb_168878_010 0.1997569893 - - 60S ribosomal protein L32A [Hevea brasiliensis]
14 Hb_000099_230 0.1998003229 - - PREDICTED: F-box protein SKIP19-like [Gossypium raimondii]
15 Hb_002374_170 0.2011942234 - - 20S proteasome beta subunit C1 [Hevea brasiliensis]
16 Hb_000788_130 0.2030060501 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like [Jatropha curcas]
17 Hb_004052_020 0.2030595013 - - Mitochondrial import receptor subunit TOM5 [Theobroma cacao]
18 Hb_000699_040 0.2039169039 - - PREDICTED: uncharacterized protein LOC105647732 [Jatropha curcas]
19 Hb_013405_060 0.203986749 - - PREDICTED: probable RNA-binding protein 18 isoform X1 [Jatropha curcas]
20 Hb_011381_060 0.2068677997 - - PREDICTED: ADP-ribosylation factor 3 [Jatropha curcas]

Gene co-expression network

sample Hb_127008_010 Hb_127008_010 Hb_001504_050 Hb_001504_050 Hb_127008_010--Hb_001504_050 Hb_000144_080 Hb_000144_080 Hb_127008_010--Hb_000144_080 Hb_009486_150 Hb_009486_150 Hb_127008_010--Hb_009486_150 Hb_027760_010 Hb_027760_010 Hb_127008_010--Hb_027760_010 Hb_001377_400 Hb_001377_400 Hb_127008_010--Hb_001377_400 Hb_003371_180 Hb_003371_180 Hb_127008_010--Hb_003371_180 Hb_000699_040 Hb_000699_040 Hb_001504_050--Hb_000699_040 Hb_004052_020 Hb_004052_020 Hb_001504_050--Hb_004052_020 Hb_003058_080 Hb_003058_080 Hb_001504_050--Hb_003058_080 Hb_000451_060 Hb_000451_060 Hb_001504_050--Hb_000451_060 Hb_000191_030 Hb_000191_030 Hb_001504_050--Hb_000191_030 Hb_000297_230 Hb_000297_230 Hb_001504_050--Hb_000297_230 Hb_000144_080--Hb_000297_230 Hb_003185_110 Hb_003185_110 Hb_000144_080--Hb_003185_110 Hb_000144_080--Hb_003058_080 Hb_001998_120 Hb_001998_120 Hb_000144_080--Hb_001998_120 Hb_002768_030 Hb_002768_030 Hb_000144_080--Hb_002768_030 Hb_000025_230 Hb_000025_230 Hb_000144_080--Hb_000025_230 Hb_175215_010 Hb_175215_010 Hb_009486_150--Hb_175215_010 Hb_009486_150--Hb_004052_020 Hb_021419_020 Hb_021419_020 Hb_009486_150--Hb_021419_020 Hb_000565_030 Hb_000565_030 Hb_009486_150--Hb_000565_030 Hb_002301_130 Hb_002301_130 Hb_009486_150--Hb_002301_130 Hb_007441_210 Hb_007441_210 Hb_009486_150--Hb_007441_210 Hb_028347_010 Hb_028347_010 Hb_027760_010--Hb_028347_010 Hb_000630_060 Hb_000630_060 Hb_027760_010--Hb_000630_060 Hb_002045_040 Hb_002045_040 Hb_027760_010--Hb_002045_040 Hb_000714_030 Hb_000714_030 Hb_027760_010--Hb_000714_030 Hb_000123_230 Hb_000123_230 Hb_027760_010--Hb_000123_230 Hb_019516_020 Hb_019516_020 Hb_027760_010--Hb_019516_020 Hb_002157_130 Hb_002157_130 Hb_001377_400--Hb_002157_130 Hb_001377_400--Hb_000144_080 Hb_013399_010 Hb_013399_010 Hb_001377_400--Hb_013399_010 Hb_001377_400--Hb_001504_050 Hb_001301_240 Hb_001301_240 Hb_001377_400--Hb_001301_240 Hb_019249_010 Hb_019249_010 Hb_003371_180--Hb_019249_010 Hb_000788_130 Hb_000788_130 Hb_003371_180--Hb_000788_130 Hb_181288_010 Hb_181288_010 Hb_003371_180--Hb_181288_010 Hb_000465_040 Hb_000465_040 Hb_003371_180--Hb_000465_040 Hb_010407_040 Hb_010407_040 Hb_003371_180--Hb_010407_040 Hb_013405_060 Hb_013405_060 Hb_003371_180--Hb_013405_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.71819 0.737767 2.46463 0.426345 2.12128 1.29306
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.92992 5.4494 0.156604 0.149863 0.519219

CAGE analysis