Hb_002157_130

Information

Type -
Description -
Location Contig2157: 95953-96595
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002157_130 0.0 - - -
2 Hb_001369_610 0.1409538423 - - PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Jatropha curcas]
3 Hb_000679_050 0.1672805138 - - Alba DNA/RNA-binding protein [Theobroma cacao]
4 Hb_007416_050 0.1693253051 transcription factor TF Family: Orphans PREDICTED: histidine kinase 5 [Jatropha curcas]
5 Hb_146673_010 0.1750284687 - - PREDICTED: tryptophan synthase alpha chain-like [Jatropha curcas]
6 Hb_007533_010 0.1751937188 transcription factor TF Family: bZIP G-box-binding factor, putative [Ricinus communis]
7 Hb_000300_080 0.176968829 - - PREDICTED: probable S-sulfocysteine synthase, chloroplastic isoform X2 [Jatropha curcas]
8 Hb_003942_020 0.1787742786 - - PREDICTED: multiple RNA-binding domain-containing protein 1 isoform X1 [Jatropha curcas]
9 Hb_000025_780 0.1809309387 - - PREDICTED: sanguinarine reductase [Jatropha curcas]
10 Hb_003666_030 0.1827294514 - - Thiol:disulfide interchange protein txlA, putative [Ricinus communis]
11 Hb_002338_020 0.1832221237 - - PREDICTED: serine/arginine-rich splicing factor SR34A [Jatropha curcas]
12 Hb_000633_020 0.1842466273 - - PREDICTED: uncharacterized protein LOC105630002 [Jatropha curcas]
13 Hb_002477_300 0.1843368899 - - transcription factor, putative [Ricinus communis]
14 Hb_017002_020 0.1851580134 - - PREDICTED: uncharacterized protein LOC105650411 [Jatropha curcas]
15 Hb_000444_080 0.1857053182 - - hypothetical protein POPTR_0019s10500g [Populus trichocarpa]
16 Hb_007101_160 0.1865910915 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004449_170 0.1868130357 - - PREDICTED: uncharacterized protein LOC105631285 isoform X1 [Jatropha curcas]
18 Hb_158092_030 0.1872954385 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic [Jatropha curcas]
19 Hb_001864_070 0.1878056149 - - PREDICTED: probable histone H2A.3 [Jatropha curcas]
20 Hb_000321_160 0.1903578645 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 9 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002157_130 Hb_002157_130 Hb_001369_610 Hb_001369_610 Hb_002157_130--Hb_001369_610 Hb_000679_050 Hb_000679_050 Hb_002157_130--Hb_000679_050 Hb_007416_050 Hb_007416_050 Hb_002157_130--Hb_007416_050 Hb_146673_010 Hb_146673_010 Hb_002157_130--Hb_146673_010 Hb_007533_010 Hb_007533_010 Hb_002157_130--Hb_007533_010 Hb_000300_080 Hb_000300_080 Hb_002157_130--Hb_000300_080 Hb_001935_100 Hb_001935_100 Hb_001369_610--Hb_001935_100 Hb_000796_160 Hb_000796_160 Hb_001369_610--Hb_000796_160 Hb_000051_060 Hb_000051_060 Hb_001369_610--Hb_000051_060 Hb_000025_780 Hb_000025_780 Hb_001369_610--Hb_000025_780 Hb_000227_170 Hb_000227_170 Hb_001369_610--Hb_000227_170 Hb_003029_070 Hb_003029_070 Hb_001369_610--Hb_003029_070 Hb_000030_180 Hb_000030_180 Hb_000679_050--Hb_000030_180 Hb_006694_020 Hb_006694_020 Hb_000679_050--Hb_006694_020 Hb_001329_290 Hb_001329_290 Hb_000679_050--Hb_001329_290 Hb_000265_240 Hb_000265_240 Hb_000679_050--Hb_000265_240 Hb_001234_080 Hb_001234_080 Hb_000679_050--Hb_001234_080 Hb_004449_170 Hb_004449_170 Hb_000679_050--Hb_004449_170 Hb_009252_060 Hb_009252_060 Hb_007416_050--Hb_009252_060 Hb_000390_090 Hb_000390_090 Hb_007416_050--Hb_000390_090 Hb_019053_060 Hb_019053_060 Hb_007416_050--Hb_019053_060 Hb_029866_120 Hb_029866_120 Hb_007416_050--Hb_029866_120 Hb_007416_050--Hb_001369_610 Hb_000877_080 Hb_000877_080 Hb_007416_050--Hb_000877_080 Hb_000633_020 Hb_000633_020 Hb_146673_010--Hb_000633_020 Hb_002477_300 Hb_002477_300 Hb_146673_010--Hb_002477_300 Hb_000465_090 Hb_000465_090 Hb_146673_010--Hb_000465_090 Hb_002946_190 Hb_002946_190 Hb_146673_010--Hb_002946_190 Hb_003077_020 Hb_003077_020 Hb_146673_010--Hb_003077_020 Hb_000731_160 Hb_000731_160 Hb_146673_010--Hb_000731_160 Hb_007533_010--Hb_000025_780 Hb_002338_020 Hb_002338_020 Hb_007533_010--Hb_002338_020 Hb_007533_010--Hb_000227_170 Hb_002542_040 Hb_002542_040 Hb_007533_010--Hb_002542_040 Hb_000181_090 Hb_000181_090 Hb_007533_010--Hb_000181_090 Hb_000424_060 Hb_000424_060 Hb_007533_010--Hb_000424_060 Hb_000723_040 Hb_000723_040 Hb_000300_080--Hb_000723_040 Hb_003942_020 Hb_003942_020 Hb_000300_080--Hb_003942_020 Hb_000075_040 Hb_000075_040 Hb_000300_080--Hb_000075_040 Hb_010812_040 Hb_010812_040 Hb_000300_080--Hb_010812_040 Hb_009659_050 Hb_009659_050 Hb_000300_080--Hb_009659_050 Hb_004055_170 Hb_004055_170 Hb_000300_080--Hb_004055_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.31208 1.65249 3.97242 0.399646 2.32263 2.25237
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.839 4.9058 0.479794 0.760551 2.89998

CAGE analysis