Hb_001369_610

Information

Type -
Description -
Location Contig1369: 483849-486544
Sequence    

Annotation

kegg
ID rcu:RCOM_1499930
description hypothetical protein
nr
ID XP_012090413.1
description PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Jatropha curcas]
swissprot
ID F4KDA6
description Protein LOW PSII ACCUMULATION 2, chloroplastic OS=Arabidopsis thaliana GN=LPA2 PE=1 SV=1
trembl
ID A0A067JS76
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26230 PE=4 SV=1
Gene Ontology
ID GO:0009507
description protein low psii accumulation chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10207: 483902-486317
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001369_610 0.0 - - PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Jatropha curcas]
2 Hb_001935_100 0.0962645148 - - structural molecule, putative [Ricinus communis]
3 Hb_000796_160 0.1035746429 - - PREDICTED: nifU-like protein 1, chloroplastic [Jatropha curcas]
4 Hb_000051_060 0.1061907426 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000025_780 0.1068487988 - - PREDICTED: sanguinarine reductase [Jatropha curcas]
6 Hb_000227_170 0.1100234168 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
7 Hb_003029_070 0.1129430763 - - PREDICTED: beta-carotene isomerase D27, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_011930_020 0.1151153245 - - PREDICTED: uncharacterized protein LOC105649787 isoform X1 [Jatropha curcas]
9 Hb_001195_460 0.1153068936 - - PREDICTED: outer envelope pore protein 24B, chloroplastic-like [Jatropha curcas]
10 Hb_146673_010 0.1154431138 - - PREDICTED: tryptophan synthase alpha chain-like [Jatropha curcas]
11 Hb_000413_060 0.1160907503 - - PREDICTED: DAG protein, chloroplastic [Populus euphratica]
12 Hb_007533_010 0.1173772469 transcription factor TF Family: bZIP G-box-binding factor, putative [Ricinus communis]
13 Hb_000373_050 0.1182773246 - - PREDICTED: protein WHI3 [Jatropha curcas]
14 Hb_019053_060 0.1185364383 - - PREDICTED: uncharacterized protein LOC105632672 [Jatropha curcas]
15 Hb_002343_040 0.1195069876 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_029866_120 0.1207868404 - - hypothetical protein CICLE_v10006070mg [Citrus clementina]
17 Hb_001541_050 0.1209159781 - - PREDICTED: serine/threonine-protein kinase AFC2-like [Jatropha curcas]
18 Hb_003077_020 0.1219233271 - - ABC transporter family protein [Hevea brasiliensis]
19 Hb_000300_180 0.1230703487 - - transcription initiation factor brf1, putative [Ricinus communis]
20 Hb_002876_220 0.1231298104 - - PREDICTED: uncharacterized protein LOC105633932 [Jatropha curcas]

Gene co-expression network

sample Hb_001369_610 Hb_001369_610 Hb_001935_100 Hb_001935_100 Hb_001369_610--Hb_001935_100 Hb_000796_160 Hb_000796_160 Hb_001369_610--Hb_000796_160 Hb_000051_060 Hb_000051_060 Hb_001369_610--Hb_000051_060 Hb_000025_780 Hb_000025_780 Hb_001369_610--Hb_000025_780 Hb_000227_170 Hb_000227_170 Hb_001369_610--Hb_000227_170 Hb_003029_070 Hb_003029_070 Hb_001369_610--Hb_003029_070 Hb_001935_100--Hb_000051_060 Hb_001935_100--Hb_000227_170 Hb_005539_010 Hb_005539_010 Hb_001935_100--Hb_005539_010 Hb_001410_070 Hb_001410_070 Hb_001935_100--Hb_001410_070 Hb_001935_100--Hb_000796_160 Hb_005946_040 Hb_005946_040 Hb_001935_100--Hb_005946_040 Hb_000796_160--Hb_000025_780 Hb_000796_160--Hb_001410_070 Hb_000487_260 Hb_000487_260 Hb_000796_160--Hb_000487_260 Hb_076778_010 Hb_076778_010 Hb_000796_160--Hb_076778_010 Hb_000230_400 Hb_000230_400 Hb_000796_160--Hb_000230_400 Hb_005162_110 Hb_005162_110 Hb_000051_060--Hb_005162_110 Hb_003752_070 Hb_003752_070 Hb_000051_060--Hb_003752_070 Hb_021650_010 Hb_021650_010 Hb_000051_060--Hb_021650_010 Hb_002876_220 Hb_002876_220 Hb_000051_060--Hb_002876_220 Hb_001232_150 Hb_001232_150 Hb_000051_060--Hb_001232_150 Hb_000025_780--Hb_000227_170 Hb_000025_780--Hb_001410_070 Hb_000025_780--Hb_001935_100 Hb_007533_010 Hb_007533_010 Hb_000025_780--Hb_007533_010 Hb_005494_010 Hb_005494_010 Hb_000025_780--Hb_005494_010 Hb_107879_010 Hb_107879_010 Hb_000227_170--Hb_107879_010 Hb_000227_170--Hb_005494_010 Hb_000227_170--Hb_003029_070 Hb_000304_070 Hb_000304_070 Hb_000227_170--Hb_000304_070 Hb_000753_240 Hb_000753_240 Hb_003029_070--Hb_000753_240 Hb_003029_070--Hb_002876_220 Hb_000300_180 Hb_000300_180 Hb_003029_070--Hb_000300_180 Hb_012022_150 Hb_012022_150 Hb_003029_070--Hb_012022_150 Hb_004970_190 Hb_004970_190 Hb_003029_070--Hb_004970_190 Hb_000804_040 Hb_000804_040 Hb_003029_070--Hb_000804_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.0439 10.6519 25.2716 6.64602 10.249 10.1088
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.3159 21.9151 7.10235 4.44385 18.3178

CAGE analysis